View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488-Insertion-13 (Length: 292)

Name: NF4488-Insertion-13
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488-Insertion-13
NF4488-Insertion-13
[»] chr7 (1 HSPs)
chr7 (8-292)||(41264824-41265093)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 41265093 - 41264824
Alignment:
Q  8 ccatgttggatatgagatgaagcctaaacatgagtttataaatagagagaatttttactttataaattaattttgtaagattgaattagacacaatttaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41265093 ccatgttggatatgagatgaagcttaaacatgagtttataaattgagagaatttttgctttataaattaattttgtaagattgaattagacacaatttaa 41264994  T
Q  108 attttagtgagaaaagtgattacatatcatatatatttttatcgtatgagaatataaactataaacaatctactataaactcttaatttaaacttgtcaa 207  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||| ||||    
T  41264993 attttagtgagaaaagtgattatgtatcatatatatttttatcgtatgagaatataaactat--------------aaactcttaatttaaacttatcaa 41264908  T
Q  208 acatgatcctatttttagtatgaagatatgattnnnnnnntctgaaattttatggacaagtcacgtacagcttgcaaattagagc 292  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  41264907 acatgatcctatttttagtatgaagatatgatt-aaaaaatctgaaattttatggacaagtcacgtacagcttgcaaattagagc 41264824  T

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