View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488-Insertion-2 (Length: 1200)

Name: NF4488-Insertion-2
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488-Insertion-2
NF4488-Insertion-2
[»] chr7 (2 HSPs)
chr7 (8-558)||(48833558-48834108)
chr7 (585-747)||(48834128-48834290)
[»] chr1 (5 HSPs)
chr1 (755-1095)||(574126-574469)
chr1 (748-795)||(30780985-30781032)
chr1 (747-795)||(42383719-42383767)
chr1 (748-795)||(38688642-38688689)
chr1 (746-795)||(34716422-34716471)
[»] chr3 (3 HSPs)
chr3 (748-968)||(49245176-49245396)
chr3 (748-795)||(45297549-45297596)
chr3 (746-795)||(49160985-49161034)
[»] chr6 (3 HSPs)
chr6 (996-1095)||(2471824-2471923)
chr6 (743-795)||(28975335-28975387)
chr6 (747-795)||(34035045-34035093)
[»] chr5 (2 HSPs)
chr5 (996-1095)||(8980983-8981082)
chr5 (748-795)||(12201377-12201424)
[»] chr4 (4 HSPs)
chr4 (996-1095)||(27135023-27135122)
chr4 (746-795)||(41261891-41261940)
chr4 (804-857)||(17083965-17084018)
chr4 (745-782)||(20351325-20351362)
[»] chr2 (2 HSPs)
chr2 (745-795)||(6085702-6085752)
chr2 (746-795)||(11872078-11872127)
[»] chr8 (1 HSPs)
chr8 (746-795)||(42346106-42346155)
[»] scaffold0129 (1 HSPs)
scaffold0129 (748-795)||(43219-43266)


Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 48833558 - 48834108
Alignment:
Q  8 acaagttatattatgggcataggaagttaatatgacaccaaaagaaccgtgttctgtgttttgctttacggcccctaattttagacacaatttttgttac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48833558 acaagttatattatgggcataggaagttaatatgacaccaaaagaaccgtgttctgtgttttgctttacggcccctaattttagacacaatttttgttac 48833657  T
Q  108 tttaattgttccagctgattctttgtcggatggaatttatccaatgataccatttggaagtcgtggtttttcacagcctagatgatcttcaagaaagatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48833658 tttaattgttccagctgattctttgtcggatggaatttatccaatgataccatttgaaagtcgtggtttttcacagcctagatgatcttcaagaaagatg 48833757  T
Q  208 tttaattgaaagtacacttcgatggaaactagttaatgtttgaattcacaatcagtttatagaagttacaaaatattgtcctaatttcgtaaattggtaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48833758 tttaattgaaagtacacttcgatggaaactagttaatgtttgaattcacaatcagtttatagaagttacaaaatattgtcctaatttcgtaaattggtaa 48833857  T
Q  308 actgatgatgggcaaagaaacatagttgacagaattcaaattgatatagaaaataatataagtgaaatcataaaccaagtatttgaaattaggtggttaa 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48833858 actgaagatgggcaaagaaacatagttgacagaattcaaattgatatagaaaagaatataagtgaaatcataaaccaagtatttgaaattaggtggttaa 48833957  T
Q  408 tgagtttctcatgaaaatgaattgttcgagagaatgtaaatttgatttttgtataaaagaannnnnnngttagactttacttcctttctgacggatcaac 507  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||  |       ||||||||||||||||||| ||||||||||||    
T  48833958 tgagtttctcacgaaaacgaattgttcaagagaatgtaaatttgatttttgtataaaaagaattttttgttagactttacttcctttatgacggatcaac 48834057  T
Q  508 atgttgttcatatataagcttgataaattgaatcatcgatctctttatcac 558  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48834058 atgttgttcatatatacgcttgataaattgaatcatcgatctctttatcac 48834108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 585 - 747
Target Start/End: Original strand, 48834128 - 48834290
Alignment:
Q  585 atcaaggttcatcctcacctttaatcacttgtaaaaggaaacacacgcaccacatgttttcatgccaaactccattagttgaaaggacctgagcacgtga 684  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48834128 atcaaggttcatcctcaccttcaatcacttgtaaaaggaaacacacgcaccacatgttttcatgccaaactccattagttgaaaggacctgagcacgtga 48834227  T
Q  685 acgttttacataatcgaaaattcaaaacaggaccacaacgcatatattgcaggaccactcata 747  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48834228 acgttttacataatcgaaaattcaaaacaggaccacaacgcgtatattgcaggaccactcata 48834290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 755 - 1095
Target Start/End: Complemental strand, 574469 - 574126
Alignment:
Q  755 tttaatatgggaaaggagagttgtttcctatcatgggaaagnnnnnnncaaccattagattacatagaaacattgatcttactatagtttgtctacacta 854  Q
    ||||||||| ||||||||||||||||  |||||| ||||||       ||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  574469 tttaatatgagaaaggagagttgttttttatcataggaaagtttttttcaaccattaaattacatagaaacattgatcttactatagtcagtctacacta 574370  T
Q  855 tatctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagtg-ttttc 953  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  574369 tatctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctgaatttttgtttagctaccttggtttcttagtgtttttc 574270  T
Q  954 ccaatcattgctcat-nnnnnnnnttgtattaatatttatacc-aaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactg-ac 1050  Q
    |||  ||||||||||         ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  574269 ccatccattgctcataaaaaaaaattgtatt-atatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaac 574171  T
Q  1051 tcattctttcatgacagcagaattgt-acaatttcatttatgcttt 1095  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||    
T  574170 tca-tctttcatgacagcagaattgtaacaatttcatttatgcttt 574126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 748 - 795
Target Start/End: Complemental strand, 30781032 - 30780985
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  30781032 ggtgaggtttaacatgggaaaggagagttgtttcccatcatgggaaag 30780985  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 747 - 795
Target Start/End: Original strand, 42383719 - 42383767
Alignment:
Q  747 aggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||||    
T  42383719 aggtggggtttagtatgggaaagagaagttgtttcctatcatgggaaag 42383767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 748 - 795
Target Start/End: Complemental strand, 38688689 - 38688642
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||||||||||||| | |||||||||| || |||||||||    
T  38688689 ggtggggtttaatatgggaaagaaaagttgtttcccatgatgggaaag 38688642  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 34716422 - 34716471
Alignment:
Q  746 taggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||||  ||||||| |||||||||||||| ||||||| ||||    
T  34716422 taggtggggtttagcatgggaatggagagttgtttcccatcatggaaaag 34716471  T

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Target: chr3 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 748 - 968
Target Start/End: Complemental strand, 49245396 - 49245176
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaagnnnnnnncaaccattagattacatagaaacattgatcttactatagtttgtc 847  Q
    ||||| |||||||||| |||||||||||| |||   ||||||| ||||       ||||||||| ||||||||| ||||||||| ||| |||||| || |    
T  49245396 ggtggagtttaatatgcgaaaggagagttatttttcatcatggaaaagtttttttcaaccattaaattacataggaacattgattttattatagtctgcc 49245297  T
Q  848 tacactatatctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttggtttcttagt 947  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  49245296 tacattatatctttataacttgtcttcaacgtacgtagtccctaccatctccctctttttcagat-ctgaatttttgtttaactaccttggtttcttagt 49245198  T
Q  948 g-ttttcccaatcattgctcat 968  Q
    | ||||||||  ||||||||||    
T  49245197 gtttttcccatccattgctcat 49245176  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 748 - 795
Target Start/End: Original strand, 45297549 - 45297596
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaag 45297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 49160985 - 49161034
Alignment:
Q  746 taggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||||  |||||||||| ||||||||||||| ||||| ||||    
T  49160985 taggtggggtttagcatgggaaaggggagttgtttcctaccatggaaaag 49161034  T

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Target: chr6 (Bit Score: 65; Significance: 6e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 996 - 1095
Target Start/End: Complemental strand, 2471923 - 2471824
Alignment:
Q  996 aaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgactcattctttcatgacagcagaattgt-acaatttcatttatgctt 1094  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||| ||||||||||||||||||    
T  2471923 aaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgctt 2471825  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 743 - 795
Target Start/End: Original strand, 28975335 - 28975387
Alignment:
Q  743 tcataggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  28975335 tcataggtggggtttagcatgggaaaggagagttgtttcctatcatggaaaag 28975387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 747 - 795
Target Start/End: Complemental strand, 34035093 - 34035045
Alignment:
Q  747 aggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||| |||||| ||||||||||||| |||||||| ||||||||||||    
T  34035093 aggtggagtttaacatgggaaaggagaattgtttcccatcatgggaaag 34035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 996 - 1095
Target Start/End: Original strand, 8980983 - 8981082
Alignment:
Q  996 aaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgactcattctttcatgacagcagaattgt-acaatttcatttatgctt 1094  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||| ||||||||||||||||||    
T  8980983 aaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgctt 8981081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 748 - 795
Target Start/End: Original strand, 12201377 - 12201424
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  12201377 ggtggggtttagtatgggaaaggagagttgtttcctaccatgagaaag 12201424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 6e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 996 - 1095
Target Start/End: Complemental strand, 27135122 - 27135023
Alignment:
Q  996 aaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgactcattctttcatgacagcagaattgt-acaatttcatttatgctt 1094  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||| ||||||||||||||||||    
T  27135122 aaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgctt 27135024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 41261940 - 41261891
Alignment:
Q  746 taggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  41261940 taggtggggtttagtatgggaaatgagagttgtttcctaccatgggaaag 41261891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 857
Target Start/End: Complemental strand, 17084018 - 17083965
Alignment:
Q  804 aaccattagattacatagaaacattgatcttactatagtttgtctacactatat 857  Q
    ||||||||||||| | || |||||| |||||| ||||||||||||| |||||||    
T  17084018 aaccattagattaaaaaggaacattaatcttattatagtttgtctatactatat 17083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 745 - 782
Target Start/End: Complemental strand, 20351362 - 20351325
Alignment:
Q  745 ataggtggggtttaatatgggaaaggagagttgtttcc 782  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  20351362 ataggtggggtttagtatgggaatggagagttgtttcc 20351325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 795
Target Start/End: Complemental strand, 6085752 - 6085702
Alignment:
Q  745 ataggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||||||||||    
T  6085752 ataggtggggtttagcatgggaaaggtgagttgtttcctaccatgggaaag 6085702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 746 - 795
Target Start/End: Original strand, 11872078 - 11872127
Alignment:
Q  746 taggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||||||||    
T  11872078 taggtggggtttaacatgggaaaaaaaagttgtttcccatcatgggaaag 11872127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 746 - 795
Target Start/End: Complemental strand, 42346155 - 42346106
Alignment:
Q  746 taggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    |||||||||||||  ||||||| |||||||||||||| ||||||||||||    
T  42346155 taggtggggtttagcatgggaatggagagttgtttcccatcatgggaaag 42346106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 748 - 795
Target Start/End: Complemental strand, 43266 - 43219
Alignment:
Q  748 ggtggggtttaatatgggaaaggagagttgtttcctatcatgggaaag 795  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||||||||||    
T  43266 ggtggggtttagtatggaaaaggggagttgtttcccatcatgggaaag 43219  T

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