View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488-Insertion-3 (Length: 1109)

Name: NF4488-Insertion-3
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488-Insertion-3
NF4488-Insertion-3
[»] chr3 (35 HSPs)
chr3 (457-581)||(42293200-42293324)
chr3 (457-581)||(48104716-48104839)
chr3 (837-933)||(42294017-42294113)
chr3 (153-335)||(42292907-42293085)
chr3 (8-106)||(42292765-42292860)
chr3 (926-1089)||(42294696-42294865)
chr3 (723-839)||(48104465-48104574)
chr3 (723-839)||(42293467-42293580)
chr3 (250-335)||(6124734-6124819)
chr3 (249-331)||(42528051-42528133)
chr3 (249-335)||(8879386-8879472)
chr3 (249-335)||(30317935-30318021)
chr3 (253-335)||(54463447-54463529)
chr3 (249-337)||(52959314-52959401)
chr3 (249-335)||(4070838-4070924)
chr3 (249-335)||(9558851-9558937)
chr3 (249-335)||(19274752-19274838)
chr3 (249-335)||(51062932-51063018)
chr3 (273-335)||(51760517-51760579)
chr3 (249-337)||(32999646-32999734)
chr3 (249-335)||(8321422-8321508)
chr3 (249-335)||(12055506-12055592)
chr3 (249-335)||(34435966-34436052)
chr3 (249-335)||(41991675-41991761)
chr3 (249-335)||(48051016-48051102)
chr3 (274-335)||(25999161-25999221)
chr3 (254-335)||(51980759-51980840)
chr3 (250-335)||(52184818-52184903)
chr3 (288-335)||(12764732-12764779)
chr3 (253-335)||(2557893-2557975)
chr3 (249-335)||(17666824-17666910)
chr3 (274-335)||(50197997-50198058)
chr3 (250-337)||(43968341-43968428)
chr3 (249-335)||(36237858-36237944)
chr3 (254-335)||(30743005-30743086)
[»] chr7 (33 HSPs)
chr7 (457-581)||(30523708-30523830)
chr7 (732-839)||(30523452-30523555)
chr7 (254-335)||(42997541-42997622)
chr7 (249-335)||(21920787-21920873)
chr7 (249-335)||(25696055-25696141)
chr7 (249-335)||(28235307-28235393)
chr7 (249-336)||(30523944-30524031)
chr7 (249-335)||(46534430-46534516)
chr7 (250-335)||(981360-981445)
chr7 (274-335)||(3370496-3370557)
chr7 (249-337)||(28958111-28958199)
chr7 (252-335)||(29994207-29994290)
chr7 (249-335)||(4060374-4060460)
chr7 (249-335)||(27826731-27826817)
chr7 (249-335)||(28494267-28494353)
chr7 (249-335)||(42265264-42265350)
chr7 (249-335)||(42329014-42329100)
chr7 (250-335)||(14792108-14792193)
chr7 (274-335)||(43158183-43158244)
chr7 (249-325)||(6476948-6477024)
chr7 (254-337)||(46615668-46615751)
chr7 (249-335)||(35647438-35647524)
chr7 (249-335)||(46672528-46672614)
chr7 (273-335)||(47479832-47479894)
chr7 (808-839)||(35747495-35747526)
chr7 (756-786)||(35747479-35747509)
chr7 (249-335)||(40061185-40061271)
chr7 (249-335)||(43156590-43156676)
chr7 (249-335)||(43337655-43337741)
chr7 (249-335)||(46536144-46536230)
chr7 (249-337)||(39870010-39870098)
chr7 (268-337)||(42980868-42980937)
chr7 (250-335)||(46350827-46350912)
[»] chr2 (26 HSPs)
chr2 (457-563)||(10361614-10361719)
chr2 (699-839)||(10361862-10361998)
chr2 (249-337)||(6432192-6432280)
chr2 (498-581)||(28124748-28124829)
chr2 (723-786)||(28124509-28124573)
chr2 (249-335)||(34245268-34245354)
chr2 (249-335)||(45376931-45377017)
chr2 (249-337)||(10361415-10361503)
chr2 (249-335)||(1876024-1876110)
chr2 (249-335)||(12160905-12160991)
chr2 (249-335)||(30523631-30523717)
chr2 (249-335)||(36936064-36936150)
chr2 (249-335)||(39241152-39241238)
chr2 (249-335)||(42097903-42097989)
chr2 (249-335)||(42519736-42519822)
chr2 (253-335)||(43568389-43568471)
chr2 (250-335)||(8875696-8875781)
chr2 (251-335)||(7454556-7454640)
chr2 (249-335)||(35422065-35422151)
chr2 (249-335)||(43496184-43496270)
chr2 (274-335)||(14958167-14958228)
chr2 (808-839)||(28124492-28124523)
chr2 (249-335)||(5774115-5774201)
chr2 (249-335)||(16496607-16496693)
chr2 (249-335)||(38324260-38324346)
chr2 (250-335)||(3147470-3147555)
[»] chr4 (31 HSPs)
chr4 (457-569)||(34438289-34438400)
chr4 (723-786)||(34439939-34440003)
chr4 (250-335)||(53431653-53431738)
chr4 (249-337)||(51941125-51941213)
chr4 (249-335)||(2943643-2943729)
chr4 (249-337)||(6238210-6238298)
chr4 (249-337)||(54683619-54683707)
chr4 (250-337)||(30653280-30653367)
chr4 (249-316)||(44525948-44526015)
chr4 (249-335)||(28778578-28778664)
chr4 (253-335)||(37498229-37498311)
chr4 (250-337)||(47633833-47633920)
chr4 (249-335)||(19801854-19801940)
chr4 (249-335)||(24152698-24152784)
chr4 (249-335)||(33984110-33984196)
chr4 (249-335)||(49335182-49335268)
chr4 (249-335)||(55001735-55001821)
chr4 (254-335)||(25687013-25687094)
chr4 (253-337)||(44448473-44448557)
chr4 (250-337)||(6287860-6287947)
chr4 (249-332)||(53284029-53284112)
chr4 (249-335)||(20356692-20356778)
chr4 (249-335)||(37114425-37114511)
chr4 (249-335)||(39840186-39840272)
chr4 (249-335)||(43374617-43374703)
chr4 (288-337)||(7141132-7141181)
chr4 (250-335)||(19800949-19801034)
chr4 (274-335)||(40685825-40685886)
chr4 (808-839)||(34439989-34440020)
chr4 (731-769)||(33434159-33434197)
chr4 (249-335)||(45561307-45561393)
[»] chr8 (26 HSPs)
chr8 (458-528)||(41788974-41789044)
chr8 (249-337)||(2773572-2773660)
chr8 (535-581)||(41788589-41788635)
chr8 (250-335)||(35057292-35057377)
chr8 (699-772)||(41788383-41788457)
chr8 (249-337)||(21266853-21266941)
chr8 (250-337)||(22215134-22215221)
chr8 (249-335)||(3512493-3512579)
chr8 (249-335)||(14911787-14911873)
chr8 (249-335)||(41355633-41355719)
chr8 (249-335)||(43800760-43800846)
chr8 (254-335)||(284845-284926)
chr8 (254-335)||(630951-631032)
chr8 (254-335)||(816763-816844)
chr8 (250-335)||(5574625-5574710)
chr8 (250-335)||(36859251-36859336)
chr8 (261-337)||(34903367-34903443)
chr8 (274-337)||(7303365-7303428)
chr8 (275-334)||(16785863-16785922)
chr8 (250-337)||(20697495-20697582)
chr8 (249-335)||(25100206-25100292)
chr8 (249-335)||(35160261-35160347)
chr8 (273-334)||(16785663-16785724)
chr8 (249-316)||(39733748-39733815)
chr8 (249-335)||(24804478-24804564)
chr8 (249-335)||(38746948-38747034)
[»] chr5 (27 HSPs)
chr5 (249-337)||(17645328-17645416)
chr5 (249-335)||(7157489-7157575)
chr5 (249-335)||(2890965-2891051)
chr5 (249-335)||(6789605-6789691)
chr5 (249-335)||(12280803-12280889)
chr5 (249-335)||(25881529-25881615)
chr5 (249-335)||(35766581-35766667)
chr5 (249-335)||(15498667-15498753)
chr5 (249-335)||(16218299-16218385)
chr5 (249-335)||(24171387-24171473)
chr5 (249-335)||(29525312-29525398)
chr5 (249-335)||(35638786-35638872)
chr5 (249-335)||(36761084-36761170)
chr5 (249-335)||(37530736-37530822)
chr5 (249-335)||(41734260-41734346)
chr5 (249-335)||(42709333-42709419)
chr5 (249-337)||(5102692-5102780)
chr5 (249-337)||(34589915-34590003)
chr5 (249-335)||(76436-76522)
chr5 (249-335)||(5050093-5050179)
chr5 (249-335)||(10815085-10815171)
chr5 (249-335)||(12953823-12953909)
chr5 (249-335)||(13359472-13359558)
chr5 (249-335)||(27812992-27813078)
chr5 (250-335)||(17540284-17540369)
chr5 (253-335)||(7614993-7615075)
chr5 (288-337)||(3703513-3703562)
[»] chr1 (27 HSPs)
chr1 (249-335)||(28343711-28343797)
chr1 (249-335)||(2459637-2459723)
chr1 (249-335)||(38058771-38058857)
chr1 (253-334)||(44277957-44278038)
chr1 (253-337)||(28955544-28955628)
chr1 (249-337)||(46315677-46315765)
chr1 (249-337)||(30358096-30358184)
chr1 (249-337)||(33076627-33076714)
chr1 (249-337)||(41865309-41865397)
chr1 (249-335)||(11332864-11332950)
chr1 (249-335)||(11490885-11490971)
chr1 (253-335)||(38624094-38624176)
chr1 (249-335)||(39325633-39325719)
chr1 (249-315)||(47326595-47326661)
chr1 (250-335)||(25365783-25365868)
chr1 (254-335)||(36739580-36739661)
chr1 (249-335)||(27747629-27747715)
chr1 (249-335)||(28314845-28314931)
chr1 (249-335)||(38815540-38815626)
chr1 (249-335)||(45900191-45900277)
chr1 (249-335)||(46742478-46742564)
chr1 (249-335)||(50586170-50586256)
chr1 (249-335)||(2937359-2937445)
chr1 (249-335)||(5698530-5698615)
chr1 (249-335)||(11823606-11823692)
chr1 (249-323)||(31657103-31657177)
chr1 (274-335)||(12014689-12014750)
[»] scaffold1391 (1 HSPs)
scaffold1391 (253-337)||(1484-1568)
[»] chr6 (11 HSPs)
chr6 (253-337)||(6834035-6834119)
chr6 (249-335)||(20645680-20645766)
chr6 (249-335)||(20992256-20992342)
chr6 (249-335)||(21459044-21459130)
chr6 (249-335)||(24119230-24119316)
chr6 (249-335)||(13756311-13756397)
chr6 (249-335)||(21860256-21860342)
chr6 (249-335)||(25023446-25023532)
chr6 (273-335)||(21778077-21778139)
chr6 (249-335)||(22707313-22707399)
chr6 (250-335)||(12130504-12130589)
[»] scaffold0007 (1 HSPs)
scaffold0007 (249-337)||(157604-157692)
[»] scaffold0076 (1 HSPs)
scaffold0076 (249-336)||(14181-14268)
[»] scaffold0330 (1 HSPs)
scaffold0330 (249-335)||(7013-7099)
[»] scaffold0115 (2 HSPs)
scaffold0115 (249-337)||(4171-4259)
scaffold0115 (249-337)||(11911-11999)
[»] scaffold0060 (1 HSPs)
scaffold0060 (249-335)||(57840-57926)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 5e-59; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 457 - 581
Target Start/End: Original strand, 42293200 - 42293324
Alignment:
Q  457 ctggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 556  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42293200 ctggccacgttaaaatacaagctacccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 42293299  T
Q  557 gttaaattcctattacttatttagc 581  Q
    ||||||||| |||||||||||||||    
T  42293300 gttaaattcttattacttatttagc 42293324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 457 - 581
Target Start/End: Complemental strand, 48104839 - 48104716
Alignment:
Q  457 ctggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 556  Q
    |||||||||||||||||||||||| ||||| | |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48104839 ctggccacgttaaaatacaagctacccacgcttttattctttaactgctgcagtacctcattgctcttttttcttga-ttttatgtttgaaacggtttct 48104741  T
Q  557 gttaaattcctattacttatttagc 581  Q
    |||||||||||||||||||||||||    
T  48104740 gttaaattcctattacttatttagc 48104716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 837 - 933
Target Start/End: Original strand, 42294017 - 42294113
Alignment:
Q  837 acagtgggttttctctcatattttggtttacgtccccctgttcgaagctttacgcatttacctcgttgattccgttatttgagttttgggttgtaaa 933  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42294017 acagtgagttttctctcatattttggtttacgtccccctgttcgaagctttacgcatttacctcgttgattccgttatttgagttttgggttgtaaa 42294113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 153 - 335
Target Start/End: Original strand, 42292907 - 42293085
Alignment:
Q  153 gtatagagccaaagttagatggatcatgaacaggagatcactcctgcggttgattgtgaatagtaaggctgtgtatgcgtatggtaacnnnnnnnnctag 252  Q
    ||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |||    ||         ||||    
T  42292907 gtatatagtcaaagttagatggatcatgaataggagatc-ctcctgcggttgattgtgaatagtaaggctgtgtttg-gtaaa--aaaaaaaaaaactag 42293002  T
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
     |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42293003 tttatagtttgttggactagcttataagttcgttggatgaaaacgtgatgtgtttggtaacaagcttttctcacgagcttata 42293085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 42292765 - 42292860
Alignment:
Q  8 gtttatatatgtttctctttagaaatattgcactcatatgttcataataatacaaaaagatctttgatcaattaattgtctctcctttatagtcttgag 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42292765 gtttatatatgtttctcttttgaaatattgcactcatatgttcataa---tacaaaaagatctttgatcaattaattgtgtctcctttatagtcttgag 42292860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 926 - 1089
Target Start/End: Original strand, 42294696 - 42294865
Alignment:
Q  926 gttgtaaaatgtgaattgctcctctctgtagacctgactggattgaagttctaagttgggttctatgtatttgaatg-tagctgactg-tggtgctctaa 1023  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || ||||| | || |||||||||||    
T  42294696 gttgtaaaatgtgaattgctcctctctgtagacctgaccggattgaagttctaagtttggttctatgtatttgactgttagcttattgttggtgctctaa 42294795  T
Q  1024 acttggtgcaaactattctactatgtgc--ttattc-agttgtgtggaatttgtttgag--tattagttct 1089  Q
    |||| ||||||||||| ||  |||||||  ||||||  ||||||| | |||||||||||  ||||||||||    
T  42294796 actt-gtgcaaactatgctgttatgtgcctttattcgggttgtgttggatttgtttgaggttattagttct 42294865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 723 - 839
Target Start/End: Complemental strand, 48104574 - 48104465
Alignment:
Q  723 tatctcaat-aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagnnnnnnnnnngttttgaagaaacataaatatatta 821  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||    
T  48104574 tatctcaatgaagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagttt--------tttttaagaaacataaatatatta 48104483  T
Q  822 gttaaaaatgtttataca 839  Q
    ||||||||||||||||||    
T  48104482 gttaaaaatgtttataca 48104465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 723 - 839
Target Start/End: Original strand, 42293467 - 42293580
Alignment:
Q  723 tatctcaat-aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagnnnnnnnnnngttttgaagaaacataaatatatta 821  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||    
T  42293467 tatctcaatgaagtttatatttcatatgtatatttttcaagaggaaaaatatataaatatattagttatttt----ttttgaagaaacataaatatatta 42293562  T
Q  822 gttaaaaatgtttataca 839  Q
    ||||||||||||||||||    
T  42293563 gttaaaaatgtttataca 42293580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 6124734 - 6124819
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||  ||||| |||||||||||||| | |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  6124734 tagcttataacttgttggactatcttataagcttgtttgatgaaaacgtgatgtgtttggtaacaaacttttctcacgagcttata 6124819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 42528133 - 42528051
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagct 331  Q
    ||||||||||| ||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  42528133 ctagcttatagcttgttggactagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaagtttttctcacgagct 42528051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 8879386 - 8879472
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||||||||| |||||||||||||  | |||||||||||| |||| ||| |||||||||    
T  8879386 ctagcttatagtttgttggattagcttataagttcgttagatgaaaacgtgacgtatttggtaacaagcttttttcatgagcttata 8879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 30318021 - 30317935
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||||||||  |||||| |||||||||||| ||| |||||||||    
T  30318021 ctagcttatagtttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttgataacaagattttttcatgagcttata 30317935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 54463529 - 54463447
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||| || ||||||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  54463529 cttatagtttgttggattatcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 54463447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 52959314 - 52959401
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||||    
T  52959314 ctagcttatagtttgttggattaacttataagctcgttggatgaaaacgtgacgtgtttggtaacaagctttt-tcatgagcttataac 52959401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 4070838 - 4070924
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| ||||||||||||  |||| |||||||||| ||| |||||||||||||| |||||||||| ||  |||||||||||| |||||    
T  4070838 ctagtttatagtttgttgaactagcttataagttagttggatgaaaacgtgatgtgtttggtaataaacttttctcacgagtttata 4070924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 9558937 - 9558851
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||||||| |||||||||    
T  9558937 ctagcttatagcttgttagattagcttataagctcgttggaagaaaacgtgacgtgtttggtaacaagcttttctcatgagcttata 9558851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 19274752 - 19274838
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||| ||||  |||||||||||||| |||||||||||| |||||    
T  19274752 ctagcttatagcttgttggattagcttataagctcgttggatgaaaatgtgacgtgtttggtaacaagcttttctcacgaggttata 19274838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 51062932 - 51063018
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | ||||||||||||||||| |||||||||||||  |||||| ||||||| |||| ||| |||||||||    
T  51062932 ctagcttatagcttgttgaattatcttataagttcgttagatgaaaacgtgacgtgtttgataacaagcttttttcatgagcttata 51063018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 51760517 - 51760579
Alignment:
Q  273 cttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||| | ||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  51760517 cttataagcttgttggatgaaaacgtgatgtgtttggtaacaagcttttctcacgagcttata 51760579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 32999734 - 32999646
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| || || || || |||||||| | ||| |||||||||||||| ||||||||||| || |||||||| |||||||||||    
T  32999734 ctagcttatagcttcttggattagcttataagcttgttggatgaaaacgtgatgtgtttggtaacgagcttttctcatgagcttataac 32999646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 8321508 - 8321422
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  8321508 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 8321422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 12055592 - 12055506
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| || || ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  12055592 ctagcttatagtttgttggattagcttataagctccttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 12055506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 34436052 - 34435966
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  34436052 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 34435966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 41991761 - 41991675
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  41991761 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 41991675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 48051016 - 48051102
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||| | |||| ||| |||||||||    
T  48051016 ctagcttatagcttgttggattaacttataagctcgttagatgaaaacgtgacgtgtttggtaacacgtttttttcatgagcttata 48051102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 25999221 - 25999161
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||| ||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  25999221 ttataagtttgttggatgaaaacgtgatgtgtttgg-aacaagcttttctcacgagcttata 25999161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 51980759 - 51980840
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||| ||||| ||||| |||||||| | ||| ||||||||| |||| ||||||||||| || |||| |||||||||||||    
T  51980759 ttatagcttgttggactagcttataagcttgttggatgaaaacatgatgtgtttggtaacgagcttttttcacgagcttata 51980840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 52184903 - 52184818
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  52184903 tagcttatagcttgttagattaacttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 52184818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 12764732 - 12764779
Alignment:
Q  288 gatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||    
T  12764732 gatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 12764779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 2557975 - 2557893
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  2557975 cttatagcttgtttgattaacttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 2557893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 17666824 - 17666910
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||| ||||| |||||||||||||  |||||||||||||  |||| ||| |||||||||    
T  17666824 ctagcttatagcttattggattaacttataagctcgttggatgaaaacgtgacgtgtttggtaacaaacttttttcatgagcttata 17666910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 50198058 - 50197997
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||| || ||| |||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  50198058 ttataaatttgttggatgaaaacgtgatgtgtttagtaacaagtttttctcatgagcttata 50197997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 43968428 - 43968341
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||| ||||||  | || |||||||| | ||| ||| ||||| |||  |||||||||||||| |||||||| |||||||||||    
T  43968428 tagcttataatttgttgaattagcttataagcttgttggatcaaaacatgacgtgtttggtaacaagtttttctcatgagcttataac 43968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 36237858 - 36237944
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| ||| |||| |||   | |||||||||||| |||| ||| |||||||||    
T  36237858 ctagcttatagtttgttggattaacttataagctcgttagataaaaatgtggcgtatttggtaacaagcttttttcatgagcttata 36237944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 30743086 - 30743005
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||| || || |||||||| | ||| |||||||| ||| | |||||||||||||| |||| ||| | |||||||    
T  30743086 ttatagtttgttggattagcttataagctggttagatgaaaatgtggtgtgtttggtaacaagcttttttcatgtgcttata 30743005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 1e-44; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 457 - 581
Target Start/End: Complemental strand, 30523830 - 30523708
Alignment:
Q  457 ctggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 556  Q
    |||||||| ||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30523830 ctggccacattaaaatacaagctacccacattattat-ctttaaccggtgcactacctcattgctcttttttcttgatttt-atgtttgaaacggtttct 30523733  T
Q  557 gttaaattcctattacttatttagc 581  Q
    |||||||||||||||||||||||||    
T  30523732 gttaaattcctattacttatttagc 30523708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 732 - 839
Target Start/End: Complemental strand, 30523555 - 30523452
Alignment:
Q  732 aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagnnnnnnnnnngttttgaagaaacataaatatattagttaaaaatg 831  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  30523555 aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagttttttt----ttttgaagaaacataaatatattagttaaaaatg 30523460  T
Q  832 tttataca 839  Q
    ||||||||    
T  30523459 tttataca 30523452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 42997541 - 42997622
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42997541 ttatagtttgttggactagcttataagctcgttggatgaaaacgtgatgtgtttggtaacaagcttttctcacgagcttata 42997622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 21920873 - 21920787
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| ||||| |||||||| | |||  ||||||||||||| |||||||||||||| |||||||| |||||||||    
T  21920873 ctagcttatagcttgttggactagcttataagctagttgaatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 21920787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 25696055 - 25696141
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||||||| |||||||||    
T  25696055 ctagcttatagcttgttagattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttctcatgagcttata 25696141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 28235307 - 28235393
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||||| | |||||||||    
T  28235307 ctagcttatagtttgttggattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttcttatgagcttata 28235393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 336
Target Start/End: Complemental strand, 30524031 - 30523944
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataa 336  Q
    ||||||||||| ||||| || || || ||||| | ||| |||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  30524031 ctagcttatagcttgttggattaactcataagcttgttggatgaaaacgtgatgtgtatggtaacaagtttttctcacgagcttataa 30523944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 46534430 - 46534516
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| | ||| |||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  46534430 ctagcttatagcttgttggattagcttataagcttgttggatgaaaacgtgatgtgtatggtaacaaacttttctcacgagcttata 46534516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 981360 - 981445
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||||||| || || |||||||| | |||  ||||||||||||| |||||| ||||||| |||| |||||||||||||    
T  981360 tagcttatagtttgttggattagcttataagctagttgaatgaaaacgtgatgtgtttgataacaagcttttttcacgagcttata 981445  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 3370496 - 3370557
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||| ||| |||||||||||||| |||||||||||||| |||||||| |||||||||    
T  3370496 ttataagtttgttggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 3370557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 28958199 - 28958111
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||||    
T  28958199 ctagcttatagcttgttggattaacttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttataac 28958111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 29994290 - 29994207
Alignment:
Q  252 gcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  29994290 gcttatagtttgttagattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 29994207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 4060374 - 4060460
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| ||||  || |||||||||    
T  4060374 ctagcttatagtttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagctttttccatgagcttata 4060460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 27826731 - 27826817
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  27826731 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 27826817  T

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Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 28494353 - 28494267
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  28494353 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 28494267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 42265350 - 42265264
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||  |||| ||| |||||||||    
T  42265350 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaaacttttttcatgagcttata 42265264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 42329100 - 42329014
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  42329100 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 42329014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 14792193 - 14792108
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| ||| |||||||||| |||||||||||||  |||| ||| |||||||||    
T  14792193 tagcttatagcttgttagattagcttataagctcgttggattaaaacgtgatgtgtttggtaacaaacttttttcatgagcttata 14792108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 43158244 - 43158183
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| |||||||||||||| |||||||||| ||| |||||||||||| |||||    
T  43158244 ttataagctcgttggatgaaaacgtgatgtgtttggtaagaagcttttctcacgagtttata 43158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 6476948 - 6477024
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctca 325  Q
    ||||||||||| || || || || |||||||| | ||| |||||||||||||| |||||||||||||| ||||||||    
T  6476948 ctagcttatagcttcttggattagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaagtttttctca 6477024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 46615751 - 46615668
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||||| || || |||||||| ||||| |||||||||||    |||||||||||||| |||| ||| |||||||||||    
T  46615751 ttatagtttgttagattagcttataagctcgttagatgaaaacgtagcgtgtttggtaacaagcttttttcatgagcttataac 46615668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 35647438 - 35647524
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || |  |||||||| ||||| |||||||| ||||  |||||||||||||| |||| ||| |||||||||    
T  35647438 ctagcttatagcttgttggatttgcttataagctcgttagatgaaaatgtgacgtgtttggtaacaagcttttttcatgagcttata 35647524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 46672528 - 46672614
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||  ||||| || || |||||||| ||||| |||||||| ||||  |||||||||||||| |||| ||| |||||||||    
T  46672528 ctagcttataacttgttggattagcttataagctcgttagatgaaaatgtgacgtgtttggtaacaagcttttttcatgagcttata 46672614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 47479832 - 47479894
Alignment:
Q  273 cttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||| ||||| |||||||||||||  |||||||||||||| |||||||| || ||||||    
T  47479832 cttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttctcatgaacttata 47479894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 808 - 839
Target Start/End: Original strand, 35747495 - 35747526
Alignment:
Q  808 acataaatatattagttaaaaatgtttataca 839  Q
    ||||||||||||||||||||||||||||||||    
T  35747495 acataaatatattagttaaaaatgtttataca 35747526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 756 - 786
Target Start/End: Original strand, 35747479 - 35747509
Alignment:
Q  756 tttcaagaggaaaaatacataaatatattag 786  Q
    |||||||||||||||||||||||||||||||    
T  35747479 tttcaagaggaaaaatacataaatatattag 35747509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 40061185 - 40061271
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| ||||| |||||||| | |||| |  |||| | ||| |||||||||| ||| ||||||||| ||||||||    
T  40061185 ctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcactagcttata 40061271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 43156590 - 43156676
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||| |||   |||||| ||||||| |||| ||| |||||||||    
T  43156590 ctagcttatagcttgttggattagcttataagctcgttagatgaaaatgtggcgtgtttgataacaagcttttttcatgagcttata 43156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 43337655 - 43337741
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||    |||||||||||||| |||| ||| |||||||||    
T  43337655 ctagcttatagcttgttggattagcttataagctcgttagacgaaaacgttgcgtgtttggtaacaagcttttttcatgagcttata 43337741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 46536144 - 46536230
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||| ||||| || || |||||||  ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  46536144 ctagcttgtagcttgttggattagcttataaactcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 46536230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 39870098 - 39870010
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataag-ttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||||||||| || || |||||||| ||  |||||| |||| | ||| |||||||||| ||| ||||||||| ||||||||||    
T  39870098 ctagcttatagtttgttggattagcttataagcttgttttgat-aaaatgagatgtgtttggtaaaaagcttttctcactagcttataac 39870010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 42980937 - 42980868
Alignment:
Q  268 actatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||| |||||||||| ||| ||| |||| ||||  |||||||||| ||| |||||||| |||||||||||    
T  42980937 actagcttataagtttgttggattaaaatgtgacgtgtttggtaataagtttttctcatgagcttataac 42980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 46350912 - 46350827
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || ||  ||||||| ||||| ||||||||| |||  |||||||||||||  |||| ||| |||||||||    
T  46350912 tagcttatagcttgttggattagtttataagctcgttagatgaaaacatgacgtgtttggtaacaaacttttttcatgagcttata 46350827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 4e-41; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 457 - 563
Target Start/End: Original strand, 10361614 - 10361719
Alignment:
Q  457 ctggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 556  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10361614 ctggccacgttaaaatacaggccacccacgttattattctttaaccgctgcactacctcattgctcttttttcttga-ttttatgtttgaaacggtttct 10361712  T
Q  557 gttaaat 563  Q
    |||||||    
T  10361713 gttaaat 10361719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 699 - 839
Target Start/End: Original strand, 10361862 - 10361998
Alignment:
Q  699 gttgagcaaatttagttnnnnnnntatctcaat-aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattagnnnnnnnnnng 797  Q
    |||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  10361862 gttgagcaaatttagttaaaaaaatatctcaatgaagtttatatttcatatttataattttcaagaggaaaaatacataaatatatta-----ccttttt 10361956  T
Q  798 ttttgaagaaacataaatatattagttaaaaatgtttataca 839  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  10361957 ttctgaagaaacataaatatattagttaaaaatgtttataca 10361998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 6432192 - 6432280
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  6432192 ctagcttatagcttgttggactagcttataagctagttggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttataac 6432280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 498 - 581
Target Start/End: Complemental strand, 28124829 - 28124748
Alignment:
Q  498 taaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttctgttaaattcctattacttatttagc 581  Q
    |||| ||||||||||||||||||| |||||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  28124829 taactgctgcactacctcattgctattttttattgatat--atgtttgaaacggtttctgttaaattcctattacctatttagc 28124748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 723 - 786
Target Start/End: Complemental strand, 28124573 - 28124509
Alignment:
Q  723 tatctcaat-aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattag 786  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28124573 tatctcaatgaagttcatatttcatatttataattttcaaggggaaaaatacataaatatattag 28124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 34245268 - 34245354
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||| |||||||||||||||| |||| ||| |||||||||    
T  34245268 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggtttgtttggtaacaagcttttttcatgagcttata 34245354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 45376931 - 45377017
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||| |||||||| |||||||||    
T  45376931 ctagtttatagcttgttggactagcttataagctagttggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 45377017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 10361415 - 10361503
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||| || || ||||||||| |||| |||||||||| ||| |||| |||||||||||||||    
T  10361415 ctagcttatagcttgttggactagcttataagctcattggatgaaaacatgatgtgtttggtaataagcttttttcacgagcttataac 10361503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 1876110 - 1876024
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  1876110 ctagcttatagtttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 1876024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 12160991 - 12160905
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  12160991 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 12160905  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 30523631 - 30523717
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  30523631 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 30523717  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 36936150 - 36936064
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| | | |||||||||    
T  36936150 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttaatgagcttata 36936064  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 39241238 - 39241152
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||  |||| ||| |||||||||    
T  39241238 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaaacttttttcatgagcttata 39241152  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 42097989 - 42097903
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||| |  || |||||||||||||| |||||||||||||| |||||||| |||||||||    
T  42097989 ctagcttatagcttcttggattagcttataagcttattggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 42097903  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 42519736 - 42519822
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  42519736 ctagcttatagcttgttgcattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 42519822  T

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Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 43568389 - 43568471
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  43568389 cttatagcttgttggattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttatcatgagcttata 43568471  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 8875696 - 8875781
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||  ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  8875696 tagcttataacttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 8875781  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 7454556 - 7454640
Alignment:
Q  251 agcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  7454556 agcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 7454640  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 35422065 - 35422151
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| ||||||||| || || || |||||||  | ||| | |||||||||||| |||||||||||||| |||||||| |||||||||    
T  35422065 ctagtttatagttttttggattagcttataaacttgttggttgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 35422151  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 43496184 - 43496270
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | || |||||||| ||||| |||||||||||||  ||||| |||||||| |||||| | |||||||||    
T  43496184 ctagcttatagcttgttgcattagcttataagctcgttggatgaaaacgtgacgtgtttagtaacaagtttttcttatgagcttata 43496270  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 14958167 - 14958228
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  14958167 ttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 14958228  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 808 - 839
Target Start/End: Complemental strand, 28124523 - 28124492
Alignment:
Q  808 acataaatatattagttaaaaatgtttataca 839  Q
    ||||||||||||||||||||||||||||||||    
T  28124523 acataaatatattagttaaaaatgtttataca 28124492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 5774115 - 5774201
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| || || |||||||| | ||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  5774115 ctagtttatagcttgttggattagcttataagcttgttagatgaaaacgtggcgtgtttggtaacaagtttttttcatgagcttata 5774201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 16496693 - 16496607
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || ||  ||||||| ||||| ||||||||||||   ||||||| |||||| |||| ||| |||||||||    
T  16496693 ctagcttatagcttgttggattagtttataagctcgttagatgaaaacgtggcgtgtttggcaacaagcttttttcatgagcttata 16496607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 38324260 - 38324346
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | || |||||||| ||||| ||||||||||||   |||||| ||||||| |||| ||| |||||||||    
T  38324260 ctagcttatagcttgttgaattagcttataagctcgttagatgaaaacgtggcgtgtttgataacaagtttttttcatgagcttata 38324346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 3147470 - 3147555
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||  ||||| || || |||||||| |  || |||||||| ||||  |||||||||||||| |||||||| |||||||||    
T  3147470 tagcttataacttgttagattagcttataagcttcttggatgaaaatgtgacgtgtttggtaacaagtttttctcatgagcttata 3147555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 457 - 569
Target Start/End: Original strand, 34438289 - 34438400
Alignment:
Q  457 ctggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctcttttttcttgatttttatgtttgaaacggtttct 556  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||| ||||||    
T  34438289 ctggccacgttaaaatacaagctatccacgttattattctttaacccctggactacctcattactcttttttcttga-ttttatgcttgaaacagtttct 34438387  T
Q  557 gttaaattcctat 569  Q
    |||||||||||||    
T  34438388 gttaaattcctat 34438400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 723 - 786
Target Start/End: Original strand, 34439939 - 34440003
Alignment:
Q  723 tatctcaat-aagtttatatttcatatttataattttcaagaggaaaaatacataaatatattag 786  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34439939 tatctcaatgaagttcatatttcatatttataattttcaagaggaaaaatacataaatatattag 34440003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 53431653 - 53431738
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| ||||| |||||||||| ||| ||||||||| |||| |||||||||||||  ||||||||||||||||||    
T  53431653 tagcttatagcttgttggactagcttataagtttgttggatgaaaacatgatgtgtttggtaacaaacttttctcacgagcttata 53431738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 51941125 - 51941213
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||||| ||| ||| ||||| |||| |||||||||||||| |||||||| |||||||||||    
T  51941125 ctagcttatagcttgttggactaacttataagtttgttggatcaaaacatgatatgtttggtaacaagtttttctcatgagcttataac 51941213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 2943729 - 2943643
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  2943729 ctagcttatagtttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 2943643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 6238210 - 6238298
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||||    
T  6238210 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttataac 6238298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 54683619 - 54683707
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||  ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||||||| |||||||||||    
T  54683619 ctagcttataacttgttagattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttctcatgagcttataac 54683707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 30653367 - 30653280
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||| | ||||| ||||| |||||||| | ||| ||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  30653367 tagcttatggcttgttggactagcttataagcttgttggatgaaaacatgatgtgtttggtaacaagcttttttcacgagcttataac 30653280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 44526015 - 44525948
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaag 316  Q
    ||||||||||||||||| || || ||||||||||||||  ||||||||||||| ||||||||||||||    
T  44526015 ctagcttatagtttgttggattagcttataagttcgttaaatgaaaacgtgatgtgtttggtaacaag 44525948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 28778578 - 28778664
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| || || ||||||||||| || |||||||||||||  |||||||||||||| ||||||||||||| ||||    
T  28778578 ctagtttatagcttgttagattaacttataagttcattggatgaaaacgtgacgtgtttggtaacaagcttttctcacgagcatata 28778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 37498229 - 37498311
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||| || || |||||||| ||||| |||||||||||||  |||||||||||||  |||||||| |||||||||    
T  37498229 cttatagtttgttggattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaaacttttctcatgagcttata 37498311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 47633920 - 47633833
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| ||| |||||||    
T  47633920 tagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagtttataac 47633833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 19801940 - 19801854
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  19801940 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 19801854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 24152698 - 24152784
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| |||||  ||||||| | ||| |||||||||||||| |||||||||| ||| ||||||||  ||||||||    
T  24152698 ctagcttatagcttgttggactagtttataagctagttggatgaaaacgtgatgtgtttggtaataagtttttctcataagcttata 24152784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 33984110 - 33984196
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  33984110 ctagcttatagcttgttgaattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 33984196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 49335268 - 49335182
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||||||||| || ||||||||||  |||||||||| ||| |||| ||| |||||||||    
T  49335268 ctagcttatagcttgttggattagcttataagttcgttagaagaaaacgtgacgtgtttggtaataagcttttttcatgagcttata 49335182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 55001821 - 55001735
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||| | |||||||||||| | |||| ||| |||||||||    
T  55001821 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggtgtgtttggtaacaggcttttttcatgagcttata 55001735  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 25687013 - 25687094
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||| || || || |||||||| | |||  ||||||||||||| |||||||||||||| |||||||| |||||||||    
T  25687013 ttatagttttttggattagcttataagcttgttgtatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 25687094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 44448473 - 44448557
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||||    
T  44448473 cttatagcttgttggattaacttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttataac 44448557  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 6287860 - 6287947
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||| || || || || ||||||||||  || |||||||||||||| |||||||||||||  |||| ||| |||||||||||    
T  6287860 tagcttatagcttcttagattagcttataagtttattggatgaaaacgtgatgtgtttggtaacaaacttttttcatgagcttataac 6287947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 53284029 - 53284112
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagctt 332  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| ||||||    
T  53284029 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagctt 53284112  T

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Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 20356778 - 20356692
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||  ||||| || || |||||||| ||||| |||||||||||||  ||||||| |||||| |||| ||| |||||||||    
T  20356778 ctagcttataacttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggcaacaagtttttttcatgagcttata 20356692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 37114511 - 37114425
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| |||||  |||||||||||   |||||||||||||| |||| ||| |||||||||    
T  37114511 ctagcttatagcttgttggattagcttataagctcgttatatgaaaacgtggcgtgtttggtaacaagtttttttcatgagcttata 37114425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 39840272 - 39840186
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| || ||||||    
T  39840272 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgaacttata 39840186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 43374617 - 43374703
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| ||| |||||    
T  43374617 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagtttata 43374703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 7141181 - 7141132
Alignment:
Q  288 gatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||||||| |||||| ||||||| ||||||| ||||||||||||    
T  7141181 gatgaaaacgtgatgtgtttgttaacaagcttttctcgcgagcttataac 7141132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 19800949 - 19801034
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| |||||  |||||||||||   |||||||||||||| |||| ||| |||||||||    
T  19800949 tagcttatagcttgttggattagcttataagctcgttacatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 19801034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 40685825 - 40685886
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||| ||||||||| |||| |||||||||||||  ||| |||| |||||||||    
T  40685825 ttataagttcgttggatgaaaacatgatgtgtttggtaacaaactttgctcatgagcttata 40685886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 808 - 839
Target Start/End: Original strand, 34439989 - 34440020
Alignment:
Q  808 acataaatatattagttaaaaatgtttataca 839  Q
    ||||||||||||||||||||||||||||||||    
T  34439989 acataaatatattagttaaaaatgtttataca 34440020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 731 - 769
Target Start/End: Original strand, 33434159 - 33434197
Alignment:
Q  731 taagtttatatttcatatttataattttcaagaggaaaa 769  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  33434159 taagttcatatatcatatttataattttcaagaggaaaa 33434197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 45561393 - 45561307
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||  ||||||| |||| ||| |||||||||    
T  45561393 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttaataacaagcttttttcatgagcttata 45561307  T

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Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 41789044 - 41788974
Alignment:
Q  458 tggccacgttaaaatacaagctagccacgttattattctttaaccgctgcactacctcattgctctttttt 528  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  41789044 tggccacgttaaaatacaagctacccacgttattattctttaaccgctgcactacctcaatgctttttttt 41788974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 2773660 - 2773572
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||| | ||| |||||||||||||  || ||||||||||| ||||||||||||||||||||    
T  2773660 ctagcttatagcttgttggactagcttataagcttgttggatgaaaacgtgacgtgcttggtaacaagcttttctcacgagcttataac 2773572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 41788635 - 41788589
Alignment:
Q  535 ttttatgtttgaaacggtttctgttaaattcctattacttatttagc 581  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  41788635 ttttatgtttgaaacggtttctgttaaattcctattacttatatagc 41788589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 35057377 - 35057292
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| |||| ||||||||  |||||||||||||| |||||||| |||||||||    
T  35057377 tagcttatagcttgttagattagcttataagctcgttggatgcaaacgtgacgtgtttggtaacaagcttttctcatgagcttata 35057292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 699 - 772
Target Start/End: Complemental strand, 41788457 - 41788383
Alignment:
Q  699 gttgagcaaatttagttnnnnnnntatctcaat-aagtttatatttcatatttataattttcaagaggaaaaata 772  Q
    |||||||||||||||||       ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  41788457 gttgagcaaatttagttaaaaaaatatctcaatgaagtttatatttcatatttataattttctagaggaaaaata 41788383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 21266941 - 21266853
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||| || ||||| || || |||| ||| || || |||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  21266941 ctagcttaaagcttgttagattagcttagaagctcattggatgaaaacgtgacgtgtttggtaacaagcttttctcacgagcttataac 21266853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 22215134 - 22215221
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||||    
T  22215134 tagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttataac 22215221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 3512493 - 3512579
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||| | ||| |||||||||||||| |||||||||||||| ||||||||  ||||||||    
T  3512493 ctagcttatagcttcttggattagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaagtttttctcattagcttata 3512579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 14911787 - 14911873
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||| |||   |||||||||||||| |||| ||| |||||||||    
T  14911787 ctagcttatagtttgttggattagcttataagctcgttagatgaaaatgtggcgtgtttggtaacaagtttttttcatgagcttata 14911873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 41355633 - 41355719
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |  || || || |||||||||| ||| |||||||||||||| |||||||||||||  |||||||| |||||||||    
T  41355633 ctagcttatagctccttggattagcttataagtttgttggatgaaaacgtgatgtgtttggtaacaaacttttctcatgagcttata 41355719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 43800846 - 43800760
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  43800846 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 43800760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 284845 - 284926
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||| ||||| || || |||||||||||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  284845 ttatagcttgttggattagcttataagttcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 284926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 631032 - 630951
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||| ||||| || || |||||||||||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  631032 ttatagcttgttggattagcttataagttcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 630951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 816844 - 816763
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||| ||||| || || |||||||||||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  816844 ttatagcttgttggattagcttataagttcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 5574625 - 5574710
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||  | || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  5574625 tagcttatagtttgttgaattaacttataagctcgttagatgaaaacgtggcgtgtttggtaacaagtttttttcatgagcttata 5574710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 36859251 - 36859336
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| |||||||||||||  | |||||||||||| |||| ||| |||||||||    
T  36859251 tagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacctatttggtaacaagtttttttcatgagcttata 36859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 34903443 - 34903367
Alignment:
Q  261 ttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||| ||||| |||||||| | ||| ||||||||| |||| |||| | ||||||| ||||||||||||||||||||    
T  34903443 ttgttggactagcttataagcttgttggatgaaaacatgatgtgttggataacaagcttttctcacgagcttataac 34903367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 7303365 - 7303428
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||| ||| |||||||| ||||| ||||||||| |||| |||||||| |||||||||||    
T  7303365 ttataagtttgttggatgaaaatgtgatgtgtttggtaccaagcttttctcatgagcttataac 7303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 16785863 - 16785922
Alignment:
Q  275 tataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttat 334  Q
    |||||| ||||| |||||||||||||  |||||||||||||| |||||||| ||||||||    
T  16785863 tataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttctcatgagcttat 16785922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 20697582 - 20697495
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||| ||||| || || |||||||| ||||| ||||||||| | |  |||||||||||||| |||| ||| |||||||||||    
T  20697582 tagcttatagcttgttggattagcttataagctcgttagatgaaaacataacgtgtttggtaacaagcttttttcatgagcttataac 20697495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 25100292 - 25100206
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| |  || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  25100292 ctagcttatagcttgttagcttagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 25100206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 35160347 - 35160261
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||||||||| ||||||||||||   |||||||||||||| |||| |||  ||||||||    
T  35160347 ctagcttatagcttattggattagcttataagttcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcaatagcttata 35160261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 16785663 - 16785724
Alignment:
Q  273 cttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttat 334  Q
    |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| ||||||||    
T  16785663 cttataagctcgttggatgaaaacgtgacgtgtttggtaacaagcttttatcatgagcttat 16785724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 39733748 - 39733815
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaag 316  Q
    ||||||||||  ||||| || || |||||||| ||||| |||||||||||| | ||||||||||||||    
T  39733748 ctagcttataccttgttggattagcttataagctcgttagatgaaaacgtggtgtgtttggtaacaag 39733815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 24804564 - 24804478
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || | |||||| | ||| |||||||| ||||| |||||||||||||| |||||||| || ||||||    
T  24804564 ctagcttatagcttcttggattagcctataagcttgttggatgaaaatgtgatgtgtttggtaacaagcttttctcatgaccttata 24804478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 38747034 - 38746948
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   || ||||||||||| |||| ||| || ||||||    
T  38747034 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtggttggtaacaagcttttttcatgaacttata 38746948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 8e-21; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 17645328 - 17645416
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||||||    
T  17645328 ctagcttatagcttgttagattagcttataagttcgttggatgaaaacgtgacgtgtttggtaacaagcttttctcatgagcttataac 17645416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 7157575 - 7157489
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| ||||| |||||||| | ||| ||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  7157575 ctagcttatagcttgttggactaacttataagcttgttggatgaaaacgtgatgcgtttggtaacaagcttttctcacgagcttata 7157489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 2891051 - 2890965
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| ||||| |||||||| | ||| |||||||| ||||| |||||| ||| ||  ||||||||||||||||||    
T  2891051 ctagcttatagtttgttggactaacttataagcttgttggatgaaaatgtgatgtgtttgataataaacttttctcacgagcttata 2890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 6789691 - 6789605
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  6789691 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 6789605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 12280803 - 12280889
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  12280803 ctagcttatagtttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 12280889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 25881529 - 25881615
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||  |||||||| |||||||||    
T  25881529 ctagcttatagcttgttagattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacaaacttttctcatgagcttata 25881615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 35766581 - 35766667
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||| | ||| |||||||||||||| |||||||||||||| |||||||| |||||||||    
T  35766581 ctagcttatagcttcttggattagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttata 35766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 15498667 - 15498753
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  15498667 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 15498753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 16218385 - 16218299
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  16218385 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 16218299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 24171387 - 24171473
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||| |||||  |||||||||||||| |||| ||| |||||||||    
T  24171387 ctagcttatagcttgttggattagcttataagctcgttagatgaaatcgtgacgtgtttggtaacaagcttttttcatgagcttata 24171473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 29525398 - 29525312
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  29525398 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 29525312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 35638786 - 35638872
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||| |||   |||||| ||||||| |||| |||||||||||||    
T  35638786 ctagcttatagtttgttggattaacttataagctcgttagatgaaaatgtggcgtgtttgataacaagcttttttcacgagcttata 35638872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 36761084 - 36761170
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  36761084 ctagcttataggttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 36761170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 37530822 - 37530736
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  37530822 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 37530736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 41734346 - 41734260
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  41734346 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 41734260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 42709333 - 42709419
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  42709333 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 42709419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 5102780 - 5102692
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||| ||||| ||||| ||||| |||||||||| ||| ||| ||||| |||| |||||| ||||||  |||||||| |||||||||||    
T  5102780 ctagcgtatagattgttggactagcttataagtttgttggatcaaaacatgatgtgtttgataacaaacttttctcatgagcttataac 5102692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 34590003 - 34589915
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||| ||   |||||||||||||| |||| ||| |||||||||||    
T  34590003 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacatggcgtgtttggtaacaagcttttttcatgagcttataac 34589915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 76436 - 76522
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| || || || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| || ||||||||||    
T  76436 ctagcttatagctttttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcccgagcttata 76522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 5050179 - 5050093
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  ||||||||||| |  |||||| | |||||||||    
T  5050179 ctagcttatagcttgttggattagcttataagctcgttggatgaaaacgtgacgtgtttggtaacgaacttttcttatgagcttata 5050093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 10815085 - 10815171
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| ||||||||  |||  ||||| |||||||| |||| ||| |||||||||    
T  10815085 ctagcttatagtttgttggattagcttataagctcgttagatgaaaatatgacgtgtttagtaacaagcttttttcatgagcttata 10815171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 12953909 - 12953823
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| |||||| || || |||||||| ||||| ||||||||||||   |||||| ||||||| |||| ||| |||||||||    
T  12953909 ctagcttataatttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttgataacaagcttttttcatgagcttata 12953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 13359558 - 13359472
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||| ||||| ||||| || || |||||||| | ||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  13359558 ctagcatatagcttgttggattagcttataagcttgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 13359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 27813078 - 27812992
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | ||  ||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||    
T  27813078 ctagcttatagcttgttgaattagtttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 27812992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 17540284 - 17540369
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| ||| |||||||||  |||||||||||||  |||| ||| |||||||||    
T  17540284 tagcttatagcttgttggattagcttataagctcgttggattaaaacgtgacgtgtttggtaacaaacttttttcatgagcttata 17540369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 7615075 - 7614993
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| || || |||||||| ||||| ||||||||| ||   |||||||||||||| |||| |||| ||||||||    
T  7615075 cttatagcttgttggattagcttataagctcgttagatgaaaacatggcgtgtttggtaacaagcttttttcacaagcttata 7614993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 3703513 - 3703562
Alignment:
Q  288 gatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||||||  |||||| ||||||| |||||||| |||||||||||    
T  3703513 gatgaaaacgtgacgtgtttgataacaagtttttctcatgagcttataac 3703562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 28343711 - 28343797
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||||||||| || || |||||||||||||| |||||||||||||| |||||||||||||| |||| ||| |||||||||    
T  28343711 ctagtttatagtttgttggagtaacttataagttcgttggatgaaaacgtgatgtgtttggtaacaagtttttttcatgagcttata 28343797  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 2459723 - 2459637
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| |  || |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  2459723 ctagcttatagcttgttggattagcttataagcttattggatgaaaacgtgatgtgtttggtaacaagcttttctcacgagcttata 2459637  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 38058771 - 38058857
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| ||||| |||||||  | ||| | |||||||||||| |||||||||||||| ||||||||||||||||||    
T  38058771 ctagcttatagcttgttggactagcttataaccttgttggttgaaaacgtgatgtgtttggtaacaagcttttctcacgagcttata 38058857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 44278038 - 44277957
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttat 334  Q
    ||||||| ||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||| |||||||| ||||||||    
T  44278038 cttatagcttgttggactagcttataagctagttggatgaaaacgtgatgtgtttggtaacaagcttttctcatgagcttat 44277957  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 28955628 - 28955544
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||| ||||| || || |||||||| ||||| |||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  28955628 cttatagcttgttagattagcttataagctcgttagatgaaaacgtgatgtgtttggtaacaagcttttttcatgagcttataac 28955544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 46315765 - 46315677
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||| |||| ||| |||||||||||    
T  46315765 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtgacgtgtttggtaacaagcttttttcatgagcttataac 46315677  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 30358096 - 30358184
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||||    
T  30358096 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttataac 30358184  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 33076627 - 33076714
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||||||||| || || || ||||| ||||| |||||||| ||||  |||||||||||||| |||||||| |||||||||||    
T  33076627 ctagcttatagtttgttagattagct-ataagctcgttggatgaaaatgtgacgtgtttggtaacaagcttttctcatgagcttataac 33076714  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 41865309 - 41865397
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| || || || || |||||||| | ||| |||||||||||||| ||||||||||| || |||||||| |||||||||||    
T  41865309 ctagcttatagcttcttggattagcttataagcttgttggatgaaaacgtgatgtgtttggtaacgagcttttctcatgagcttataac 41865397  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 11332864 - 11332950
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||||||||| ||||| |||||||| ||||  ||||||||  |||| ||||| |||||||| |||||||| |||||||||    
T  11332864 ctagtttatagtttgttggactagcttataagctcgtgggatgaaaaattgatgtgtttagtaacaagcttttctcaggagcttata 11332950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 11490885 - 11490971
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||||||||| ||||| |||||||| ||||  ||||||||  |||| ||||| |||||||| |||||||| |||||||||    
T  11490885 ctagtttatagtttgttggactagcttataagctcgtgggatgaaaaattgatgtgtttagtaacaagcttttctcaggagcttata 11490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 38624094 - 38624176
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  38624094 cttatagtttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 38624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 39325633 - 39325719
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  39325633 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 39325719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 47326661 - 47326595
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaa 315  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||||||| | |||||||||||||    
T  47326661 ctagcttatagtttgttggattagcttataagctcgttagatgaaaacgtggtgtgtttggtaacaa 47326595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 25365783 - 25365868
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||||||||||  |||||| | |||||||||    
T  25365783 tagcttatagcttgttagattaacttataagctcgttggatgaaaacgtgacatgtttggtaacaaacttttcttatgagcttata 25365868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 36739580 - 36739661
Alignment:
Q  254 ttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||| || || |||||||| ||||| |||||||||||||  ||||||||||| || |||| ||| |||||||||    
T  36739580 ttatagtttgttggattaacttataagctcgttagatgaaaacgtgacgtgtttggtaacgagcttttttcatgagcttata 36739661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 27747629 - 27747715
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| || ||||||    
T  27747629 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttatcatgaacttata 27747715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 28314931 - 28314845
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| ||||| |||||| || || |||||||| || || ||| |||||||||| |||||||||||||| |||| ||| |||||||||    
T  28314931 ctagtttataatttgttggattaacttataagctcattagataaaaacgtgatgtgtttggtaacaagcttttttcatgagcttata 28314845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 38815626 - 38815540
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||| |||   |||||||||||||| |||| ||| |||||||||    
T  38815626 ctagcttatagcttgttggattagcttataagctcgttagatgaaaatgtggcgtgtttggtaacaagcttttttcatgagcttata 38815540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 45900191 - 45900277
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| || || |||||||| ||||| || ||||||||||| |||||||||||||  |||| ||| |||||||||    
T  45900191 ctagtttatagcttgttggattagcttataagctcgttagaagaaaacgtgatgtgtttggtaacaaacttttttcatgagcttata 45900277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 46742478 - 46742564
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||||| || || ||  ||||||| | ||| ||||||||| ||||  ||||||||||||| |||||||| |||||||||    
T  46742478 ctagcttatagtttcttggattagattataagcttgttggatgaaaacatgatgcgtttggtaacaagcttttctcatgagcttata 46742564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 50586256 - 50586170
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| || ||||||    
T  50586256 ctagcttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgaccttata 50586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 2937359 - 2937445
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| |||||  | || |||||||||| ||| ||| |||| ||||| |||||||||||||  |||||| | |||||||||    
T  2937359 ctagcttatagcttgttgaattagcttataagtttgttggatcaaaatgtgatgtgtttggtaacaaacttttcttatgagcttata 2937445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 5698530 - 5698615
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| ||||| |||||||| | ||||||| |||| | ||| |||||| ||| ||| ||||||||| ||||||||    
T  5698530 ctagcttatagcttgttggactaacttataagcttgtttgat-aaaatgagatgtgtttgataaaaagcttttctcactagcttata 5698615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 11823606 - 11823692
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| || || |||||||| ||||| ||||||||||||   |||| ||||||||| |||| ||| |||||||||    
T  11823606 ctagtttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgttcggtaacaagtttttttcatgagcttata 11823692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 31657177 - 31657103
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttct 323  Q
    |||| ||||| |||||| || || |||||||| ||||  |||||||||||||| ||||||| |||||| ||||||    
T  31657177 ctagtttataatttgttggattagcttataagctcgtcggatgaaaacgtgatgtgtttggcaacaagcttttct 31657103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 12014689 - 12014750
Alignment:
Q  274 ttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||| ||||| |||||||||||| | ||| |||||||||| |||| ||| |||||||||    
T  12014689 ttataagctcgttagatgaaaacgtggtgtgtgtggtaacaagtttttttcatgagcttata 12014750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1391 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 1568 - 1484
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||||||  |||| |||||||| | ||| |||||||||||||| |||||||||||||  |||||||| |||||||||||    
T  1568 cttatagtttgttgaactagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaaacttttctcatgagcttataac 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 6834119 - 6834035
Alignment:
Q  253 cttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    |||||||||||||  |||| |||||||| | ||| |||||||||||||| |||||||||||||  |||||||| |||||||||||    
T  6834119 cttatagtttgttgaactagcttataagcttgttggatgaaaacgtgatgtgtttggtaacaaacttttctcatgagcttataac 6834035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 20645680 - 20645766
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||| ||||  |||||||||||||| |||| | | |||||||||    
T  20645680 ctagcttatagtttgttggattagcttataagctcgttagatgaaaatgtgacgtgtttggtaacaagctttttttatgagcttata 20645766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 20992342 - 20992256
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||||||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  20992342 ctagtttatagtttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 20992256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 21459044 - 21459130
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||||||||  |||||| ||||||| |||||| | |||||||||    
T  21459044 ctagcttatagcttgttagattagcttataagctcgttggatgaaaacgtgacgtgtttgataacaagcttttcttatgagcttata 21459130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 24119316 - 24119230
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||||    
T  24119316 ctagcttatagcttgttggattagcttataagctcgttagaagaaaacgtgacgtgtttggtaacaagcttttttcatgagcttata 24119230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 13756397 - 13756311
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||| |||||| ||||| || || |||||||| ||||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  13756397 ctagtttatagcttgttggattagcttataagctcgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 13756311  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 21860256 - 21860342
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || |||||||||   |||||||||||||| |||| ||| |||||||||    
T  21860256 ctagcttatagcttgttggattagcttataagctcgttagacgaaaacgtggcgtgtttggtaacaagtttttttcatgagcttata 21860342  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 25023532 - 25023446
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| | ||| ||||||||||||   |||||||||||||| |||| ||| |||||||||    
T  25023532 ctagcttatagcttgttggattagcttataagcttgttagatgaaaacgtggcgtgtttggtaacaagcttttttcatgagcttata 25023446  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 21778139 - 21778077
Alignment:
Q  273 cttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||| ||||| ||||||||  || | |||||||||||||| |||| |||||||||||||    
T  21778139 cttataagctcgttagatgaaaatctggtgtgtttggtaacaagcttttttcacgagcttata 21778077  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 22707313 - 22707399
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || ||  ||||||| ||||| |||||||||||||  || ||||||||||| ||||  || |||||||||    
T  22707313 ctagcttatagcttgttggattagtttataagctcgttagatgaaaacgtgacgtgattggtaacaagctttttccatgagcttata 22707399  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 12130504 - 12130589
Alignment:
Q  250 tagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||| ||||| || || ||||||| || ||| ||||||||||||   |||||||||||||  |||| ||| |||||||||    
T  12130504 tagcttatagcttgttggattagcttataaatttgttagatgaaaacgtggcgtgtttggtaacaaacttttttcatgagcttata 12130589  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 157692 - 157604
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||||||||| || || |||||||| ||||| |||||||| ||||  |||||||||| ||| |||||||| ||| |||||||    
T  157692 ctagcttatagtttgttagattagcttataagctcgttggatgaaaatgtgacgtgtttggtaaaaagcttttctcatgagtttataac 157604  T

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Target: scaffold0076 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Complemental strand, 14268 - 14181
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataa 336  Q
    |||||||||||||| || || ||  ||||||| ||||| |||||||||||||  |||||||||||||  |||| ||| ||||||||||    
T  14268 ctagcttatagtttattggattagattataagctcgttagatgaaaacgtgacgtgtttggtaacaaacttttttcatgagcttataa 14181  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 7013 - 7099
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    |||||||||||||||||  | || ||||||| |||||| ||||||||||||   |||||||||||||  |||| ||| |||||||||    
T  7013 ctagcttatagtttgttgaattagcttataaattcgttagatgaaaacgtggcgtgtttggtaacaaacttttttcatgagcttata 7099  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 4171 - 4259
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||| | |||| |  |||| | ||| |||||||||| ||| ||||||||| ||||||||||    
T  4171 ctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcactagcttataac 4259  T

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Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 11911 - 11999
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttataac 337  Q
    ||||||||||| ||||| ||||| |||||||| | |||| |  |||| | ||| |||||||||| ||| ||||||||| ||||||||||    
T  11911 ctagcttatagcttgttggactagcttataagcttgttttaataaaatgagatgtgtttggtaaaaagcttttctcactagcttataac 11999  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 57926 - 57840
Alignment:
Q  249 ctagcttatagtttgttcgactatcttataagttcgtttgatgaaaacgtgatttgtttggtaacaagattttctcacgagcttata 335  Q
    ||||||||||| ||||| || || |||||||| ||||| || ||||| |||   |||||||||||||| |||| ||| |||||||||    
T  57926 ctagcttatagcttgttggattagcttataagctcgttagacgaaaatgtggcgtgtttggtaacaagcttttttcatgagcttata 57840  T

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