View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4488-Insertion-6 (Length: 562)
Name: NF4488-Insertion-6
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488-Insertion-6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 35 - 562
Target Start/End: Complemental strand, 34142129 - 34141600
Alignment:
| Q |
35 |
gttagaggagcctcttgattcacc--aagtaatcatctcagttataatttcaggtgaaaagaagaaaatgccaatggaaatgactcccaatttgttcatt |
132 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142129 |
gttagaggagcctcttgattcccccgaagtaatcatctcagttataatttcaggtgtaaagaagaaaatgccaatggaaatgactcccaatttgttcatt |
34142030 |
T |
|
| Q |
133 |
tgcaatgagaaattgaatgcaacaggtatgtttatcattattattacatgtggcttcatgcaattgtatgcgcttacattaaccttttgattgcagggcc |
232 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34142029 |
tgcaatgaaaaattgaatgcaacaggtatgtttatcattattattacatgtggcttcatgcaattgtacgcgcttacattaaccttttgattgcagggcc |
34141930 |
T |
|
| Q |
233 |
gccagagattattattaagaaagagtataatgaagatgaaactgtgacctgtgtggtgctcgctgataacagtgatcttgtatgaaattaacatacctat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34141929 |
gccagagattattattaagaaagagtataatgaagatgaaactgtgacctgtgtggtgctcgctgataacagtcatcttgtatgaaattaacatacctat |
34141830 |
T |
|
| Q |
333 |
ttgcgcttgtgttatatacattgttattgttttgtagtttatttatattataaattgattttgccttacaaactgggattgtaggggcagggtttatggt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34141829 |
ttgcgcttgtgttatatacattgttattgttttgtagtttatttatgttataaattgattttgccttacaaactgggattgtaggagcagggtttatggt |
34141730 |
T |
|
| Q |
433 |
tgtatctagcccagcactttattttgtttttcctttctattttgaaagcttgtcattctccatctgattgaatgctaaaatttatcactactcatttagg |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34141729 |
tgtatctagcccagcactttattttgtttttcctttctattttgaaagcttgtcattctccatctgattgaatgctaaaatttatcactactcatttagg |
34141630 |
T |
|
| Q |
533 |
ttgtaattttaaatggcccgtggtttctca |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34141629 |
ttgtaattttaaatggcccgtggtttctca |
34141600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University