View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488-Insertion-7 (Length: 463)
Name: NF4488-Insertion-7
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488-Insertion-7 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 138 - 463
Target Start/End: Complemental strand, 46677344 - 46677019
Alignment:
| Q |
138 |
taaaccattacgaaggcatagaaaatgaaacggtgtcttctggaaggaaacctgaactgccgagatgcacttcttctgggagccaagggcatcgcctgcc |
237 |
Q |
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| T |
46677344 |
taaactattacgaaggcatagaaaatgaaacggtgtcttctgaaaggaaacctgaactgccgagatgcacttcttatgggagccaagggcatcgcctgcc |
46677245 |
T |
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| Q |
238 |
gcaggtccctgcatcaatggaaatacatttgcggccatccgagattgaagttgatgctgctgaagatatcactcagtcaccagttcacattgctggtgaa |
337 |
Q |
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| T |
46677244 |
gcaggtccctgcatcaatggaaatacatttgcggccatccgagattgaagttgatgctgctgaagatatcactcagtcaccagttcacattgctggtgaa |
46677145 |
T |
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| Q |
338 |
gatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
437 |
Q |
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| T |
46677144 |
gatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
46677045 |
T |
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| Q |
438 |
tagtttttaactttcttcattagcct |
463 |
Q |
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| T |
46677044 |
tagtttttaactttcttcattagcct |
46677019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 46677680 - 46677541
Alignment:
| Q |
8 |
gttgcctgtgtacaagatggctctatcgaaggctcaagttgtgataataatttatgtacaacaaaatctgatgagaggaatgctagtaatgagcagccat |
107 |
Q |
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| T |
46677680 |
gttgcctgtgtacaagatggctctatcgaaggctcaaattgtgataataatttatgtacaacaaaatctgatgagaggaatgctagtaatgagcagccat |
46677581 |
T |
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| Q |
108 |
tgcttccagacttgaatgaacttccagacttaaaccatta |
147 |
Q |
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| T |
46677580 |
tgcttccagacttgaatgaacttcaagacttaaactatta |
46677541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 46685671 - 46685557
Alignment:
| Q |
337 |
agatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacc |
436 |
Q |
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| T |
46685671 |
agatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattgtcgattccactgcttgataatctttattccatta------ttatatg |
46685580 |
T |
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| Q |
437 |
ttagtttttaactttcttcatta |
459 |
Q |
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| T |
46685579 |
ttagtttttaactttcttcatta |
46685557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 46703694 - 46703575
Alignment:
| Q |
338 |
gatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
437 |
Q |
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| T |
46703694 |
gatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccatta------ttatatgt |
46703601 |
T |
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| Q |
438 |
tagtttttaactttcttcattagcct |
463 |
Q |
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| T |
46703600 |
tagtttttaactttcttcattagcct |
46703575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 46704077 - 46703980
Alignment:
| Q |
117 |
acttgaatgaacttccagacttaaaccattacgaaggcatagaaaatgaaacggtgtcttctggaaggaaacctgaactgccgagatgcacttcttct |
214 |
Q |
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| T |
46704077 |
acttgaatgcacttccagccttaaatcattacgaaggcatagaaaatgaaaagatgccttctcaaaggaaacctgaatcaccgagctgcacttattct |
46703980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 46703899 - 46703832
Alignment:
| Q |
298 |
tgaagatatcactcagtcaccagttcacattgctggtgaagatttctgtcagagtacccctaaaagga |
365 |
Q |
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| T |
46703899 |
tgaagatgtcaccaagtcatcagttcacattcctggtgaagatttctgtcagagtactcccaaaagga |
46703832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 21728373 - 21728253
Alignment:
| Q |
306 |
tcactcagtcaccagttcacattgctggtgaagatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttg |
405 |
Q |
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| T |
21728373 |
tcactcggtcatcagttcccattgccggtgaagatttatgtcagactgcccccaaaaggaagagaaaatggtagttattgattattgattcttcttcttt |
21728274 |
T |
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| Q |
406 |
ataatctttattccattatta |
426 |
Q |
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| T |
21728273 |
ataatctttattccattatta |
21728253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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