View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488-Insertion-9 (Length: 374)
Name: NF4488-Insertion-9
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 32127615 - 32127983
Alignment:
| Q |
7 |
agaaaatataaa-ttttatttgtatgataataaggcatacatgaaaatgatgctacgagatcacataataaacgtcatctaataatttaaacattaatca |
105 |
Q |
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| T |
32127615 |
agaaaatataaaattttatttgtatgataataaggcatacatgaaaatgatgctacaagatcacataataaacgtcatctaataatttaaacattaatca |
32127714 |
T |
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| Q |
106 |
atagatacaaaggaaatgagtttcttgaagctcttcgatgcattctcatgcacaaaggccttgtaagggtaggactcagatccaatgatgacataaagga |
205 |
Q |
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| T |
32127715 |
atagatacaaaggaaatgagtttcttgaagctcttcgatgcattctcatgcacaaaggccttgtaagggtaggactcagatccaatgatgacataaagga |
32127814 |
T |
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| Q |
206 |
tgaaacggtagttggtcccatcaacagcttgtgattcacccttgatgatcttgtccaactttgaataaaatctttgttgcttgccatactcggtcacggc |
305 |
Q |
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| T |
32127815 |
tgaaacggtagttggtcccatcaacagcttgtgattcacccttgatgatcttgtccaactttgaataaaatctttgttgcttgccatactcggtcacggc |
32127914 |
T |
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| Q |
306 |
aaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggggctataaccacctggttttgc |
374 |
Q |
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| T |
32127915 |
aaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggggctataaccacctggttttgc |
32127983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 7 - 374
Target Start/End: Original strand, 32147883 - 32148254
Alignment:
| Q |
7 |
agaaaatataaa-ttttatttgtatgataataaggcatacatgaaaatgatgctacgagatcacataataaacgtcatctaataatttaaacattaatca |
105 |
Q |
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| T |
32147883 |
agaaaatataaaattttatttgtttgataataaggcatacatgaaaatgatgctataaaatcacataataaacatcatctaataatttaagcattaatta |
32147982 |
T |
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| Q |
106 |
atagatacaaaggaaatgagtttcttgaagctcttcgatgcattctcatgcacaaaggccttgtaagggtaggactcagatccaatgatgacataaagga |
205 |
Q |
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| T |
32147983 |
ataggtacaaaggaaatgagtttcttgaagttcttcaaacgattctcatacacaatggcttggtaagggtaggacatagattcaatgatggcagaaagga |
32148082 |
T |
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| Q |
206 |
tgaaacggtagttggtcccatcaacagcttgtgattcacccttgatgatcttgtccaact---ttgaataaaatctttgttgcttgccatactcggtcac |
302 |
Q |
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| T |
32148083 |
ggagacggtagttggtcccatcaacaacttgtgtttcacccttggtgatcttctcaagcttaatttgctttatcccttgttgtttgccgtactcggtcac |
32148182 |
T |
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| Q |
303 |
ggcaaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggggctataaccacctggttttgc |
374 |
Q |
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| T |
32148183 |
ggcaaagttggcgatttcaatcaagtgatgatcattgaggttcttgatggggctataaccaccaggtattgc |
32148254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 44664734 - 44664807
Alignment:
| Q |
292 |
tactcggtcacggcaaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggggctataaccacc |
365 |
Q |
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| T |
44664734 |
tactcggtaacagcaaaattggcgataacaatcacgtgtggatcgttgatgtccttgattgggctccaaccacc |
44664807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 282 - 369
Target Start/End: Complemental strand, 5520798 - 5520711
Alignment:
| Q |
282 |
ttgcttgccatactcggtcacggcaaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggggctataaccacctggt |
369 |
Q |
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| T |
5520798 |
ttgcttgtcgtactcggtcacagcaaacttggcgatttcaatcacgtgtggatcattgaggtccttgatggggctataaccacctggt |
5520711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14453069 - 14453009
Alignment:
| Q |
16 |
aaattttatttgtatgataataaggcatacatgaaaatgatgctacgagatcacataataa |
76 |
Q |
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| T |
14453069 |
aaattttattggcatgataataagacataaatgataatgatgctataagatcacataataa |
14453009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 14452870 - 14452815
Alignment:
| Q |
211 |
cggtagttggtcccatcaacagcttgtgattcacccttgatgatcttgtccaactt |
266 |
Q |
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| T |
14452870 |
cggtagttggtcccatgaacaatttgtgattcacctttgatgatcttctcgaactt |
14452815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 39878014 - 39877955
Alignment:
| Q |
294 |
ctcggtcacggcaaagttggcgatttcaatcacgtgtggatcattgaggttcttgatggg |
353 |
Q |
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| T |
39878014 |
ctcggtaacagcatagttggcgatatcaatcacatgtggatcattgatattcttgatggg |
39877955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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