View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_high_1 (Length: 472)
Name: NF4488_high_1
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 187 - 425
Target Start/End: Original strand, 14042419 - 14042657
Alignment:
| Q |
187 |
atctataaatagatgcttgcatcatcattgattcatccattcaatacgcaaatttagatagagggggagagagatggagagcctatgagagaaaaagagt |
286 |
Q |
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| T |
14042419 |
atctataaatagatgcttgcatcatcattgattcatccattcaatacgcaaatttagatagagggggagagagatggagagcctatgagagaaaaagagt |
14042518 |
T |
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| Q |
287 |
gcataaacaaggtgggaacatcgaaggcttgtagatttagtttgatgatacatcatcttctcctaccaataaaaggaagacttattaaccaatttctcta |
386 |
Q |
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| T |
14042519 |
gcataaacaaggtgggaatgtagaaggcttgtagatttagtttgatgatacatcatcttctcctaccaataaaaggaagacttattaaccaatttctcta |
14042618 |
T |
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| Q |
387 |
ttgtattggtcttccatcatctgaagtttactttctaaa |
425 |
Q |
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| T |
14042619 |
ttgtatcggtcttccatcatctgaagtttactttctaaa |
14042657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 14042226 - 14042388
Alignment:
| Q |
26 |
cacggcgagtttcaattcagaagctcgtgttctgaaataggagaatatcagcctgcaaagaaaacaactcgcttcgtgattgattgcgttttatctccca |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14042226 |
cacggcgagtttcaattcagaagctcgtgttctgaaataggagaatatcggcctacaaagaaaacaactcgcttcgtgattgattgcgttttatctccca |
14042325 |
T |
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| Q |
126 |
catgtggctgagctggcaaaaatctattggcgaagtaacatttgttcgcctataaagaaccat |
188 |
Q |
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| T |
14042326 |
catgtggctgagctggcaaaaatctattggcgaagtaacatttgttcgcctataaagaaccat |
14042388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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