View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_high_12 (Length: 233)
Name: NF4488_high_12
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43554074 - 43554293
Alignment:
| Q |
1 |
tgttagataatgaaatgatgcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattg |
100 |
Q |
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| T |
43554074 |
tgttagataatgaaatgatgcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattg |
43554173 |
T |
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| Q |
101 |
ttgttgtattgtaaagcaacatttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccat |
200 |
Q |
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| T |
43554174 |
ttgttgtattgtaaagcaacatttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccat |
43554273 |
T |
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| Q |
201 |
tctcgtcgatcacttgagaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43554274 |
tctcgtcgatcacttgagaa |
43554293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 43550125 - 43550289
Alignment:
| Q |
53 |
gagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaacatttgaatcgcgttttagtaggatccatacag |
152 |
Q |
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|||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43550125 |
gagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagcaagttttgaatcgcgacttagtaggatccatacaa |
43550224 |
T |
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| Q |
153 |
tctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttga |
217 |
Q |
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|||| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
43550225 |
tctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttga |
43550289 |
T |
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