View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_high_13 (Length: 222)
Name: NF4488_high_13
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31733300 - 31733091
Alignment:
| Q |
1 |
tagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcacaacatgacttgaatttaattacgaaaagctagatgtgtccaaatgc |
100 |
Q |
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| T |
31733300 |
tagacgagtgatactcatgtcggggtaggcttgagaattgagatcaattctcacaacatgacttgaatttaattacgaaaagttagatgtgtccaaatgc |
31733201 |
T |
|
| Q |
101 |
acatatatattgtagatatatctttaaattcttaacttgctatctaataggtactaagataccaaccacattagttttaagaactttatgaaactttagc |
200 |
Q |
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| T |
31733200 |
acatatacattgtagatatatctttaaattcttaacttgctatctgatgggtactaagataccaaccacattacttttaagaattttatgaaactttagc |
31733101 |
T |
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| Q |
201 |
cacttttcat |
210 |
Q |
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|||||||||| |
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| T |
31733100 |
cacttttcat |
31733091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 32852816 - 32853032
Alignment:
| Q |
3 |
gacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcacaacatgacttgaatttaattacgaaaagcta-----------gatgtg |
91 |
Q |
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|||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||| |||||| |
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| T |
32852816 |
gacgagggatgctcatgccggggtaggcttgaga-------tcaattttcacaacatgacttgaatttcaccacgaaaagctaattcattggaagatgtg |
32852908 |
T |
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| Q |
92 |
tccaaatgcacatatatattgtagatatatc-----tttaaattcttaacttgctatctaataggtactaagataccaaccacattagttttaagaactt |
186 |
Q |
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||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||| |
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| T |
32852909 |
tccaaatacacatatacattgtagatatatccatcttttaagttcttaacttgctatctgatgggtactaagataccaaccacatcagttttaagaactt |
32853008 |
T |
|
| Q |
187 |
tatgaaactttagccacttttcat |
210 |
Q |
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|||||||||||||||||||||||| |
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| T |
32853009 |
tatgaaactttagccacttttcat |
32853032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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