View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_high_3 (Length: 363)
Name: NF4488_high_3
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 40 - 347
Target Start/End: Original strand, 42743032 - 42743355
Alignment:
| Q |
40 |
gataacagtttagagagaagaaaatgcaaacacagagaaatacagaacctttatttgttgattttcttctttaatttatttttcatgctcttctttaata |
139 |
Q |
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| T |
42743032 |
gataacagtttagagagaagaaaatgcaaacacagagaaatacagaacctttatttgttgattttcttctttaatttatttttcatgctcttctttaata |
42743131 |
T |
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| Q |
140 |
tattatagatgttatgatatgaatacttgttgaggataataatattattatcatagctttagttccatgttggtgtttctgacatttttatgcataagag |
239 |
Q |
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| T |
42743132 |
tattatagatgttatgatatgaatacttgttgaggagaataatattattatcatagctttagttccatgttggtgtttctgacatttttatgcatacgaa |
42743231 |
T |
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| Q |
240 |
ttttctgttttcaggttcttacaatatacttctaagt----------------ttagtgaaatgacagaaaaatcacgatctttcattgagtattatggt |
323 |
Q |
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| T |
42743232 |
ttttctgttttcaggttcttacaatatacttctaagttctgttgcactacaaattagtgaaatgacagaaaaatcacgatctttcattgagtattatggt |
42743331 |
T |
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| Q |
324 |
aaaacttttttacaactatattgt |
347 |
Q |
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| T |
42743332 |
aaaacttttttacaactatattgt |
42743355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 42742974 - 42743010
Alignment:
| Q |
7 |
caaagggatccaaaacttcgactgtacggaaatgata |
43 |
Q |
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| T |
42742974 |
caaagggatccaaaactttgactgtacggaaatgata |
42743010 |
T |
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