View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4488_high_8 (Length: 274)

Name: NF4488_high_8
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4488_high_8
NF4488_high_8
[»] chr4 (4 HSPs)
chr4 (3-157)||(35030668-35030822)
chr4 (154-258)||(35030514-35030618)
chr4 (154-222)||(27756118-27756186)
chr4 (172-220)||(30534708-30534756)
[»] chr3 (2 HSPs)
chr3 (167-226)||(31750946-31751005)
chr3 (172-225)||(28955908-28955961)
[»] chr5 (1 HSPs)
chr5 (172-226)||(15259745-15259799)
[»] chr2 (3 HSPs)
chr2 (167-223)||(14510972-14511028)
chr2 (154-223)||(15824953-15825022)
chr2 (168-229)||(29981744-29981805)
[»] scaffold0015 (1 HSPs)
scaffold0015 (161-208)||(43232-43279)
[»] chr1 (3 HSPs)
chr1 (164-223)||(14465074-14465133)
chr1 (171-229)||(28554370-28554428)
chr1 (171-208)||(11642714-11642751)
[»] chr8 (1 HSPs)
chr8 (167-225)||(25106743-25106801)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 35030822 - 35030668
Alignment:
Q  3 cataggggataccaaacattcatcaaactttatttaattgttggtctaaattattatgatagctcctttctcctaaaacattaggatagtaataaaaatg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35030822 cataggggataccaaacattcatcaaactttatttaattgttggtttaaattattatgatagctcctttctcctaaaacattaggatagtaataaaaatg 35030723  T
Q  103 taaaattatacttattgtcctttgaccattaatcttaaataacaatctcgtcatt 157  Q
     |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  35030722 caaaattatacttattgtcttttgaccattaattttaaataacaatttcgtcatt 35030668  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 35030618 - 35030514
Alignment:
Q  154 cattaaaagttcgtatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatgacaaccaattaaaaaacatagaagtgtt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35030618 cattaaaagttcgtatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatgacaaccaattaaaaaacatagaagtgtt 35030519  T
Q  254 ttaat 258  Q
    |||||    
T  35030518 ttaat 35030514  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 27756186 - 27756118
Alignment:
Q  154 cattaaaagttcgtatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaa 222  Q
    |||||||||||| ||||||||||||||||| ||||| ||| || |||||| |||| | |||| ||||||    
T  27756186 cattaaaagttcatatcaaaataaaatcatagatttgaattttcaaaatttatatacgaattaatcaaa 27756118  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 30534708 - 30534756
Alignment:
Q  172 aaataaaatcattgatttaaatctttaaaattcatatgcaaattcatca 220  Q
    |||||||||||| ||||| |||||||||||| |||||||||||| ||||    
T  30534708 aaataaaatcatagatttgaatctttaaaatccatatgcaaattgatca 30534756  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 31750946 - 31751005
Alignment:
Q  167 tatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatga 226  Q
    ||||||||||||| ||| ||||| |||||| |||||||||||||||||| ||||||||||    
T  31750946 tatcaaaataaaaccatagatttgaatcttgaaaattcatatgcaaattaatcaaaatga 31751005  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 28955908 - 28955961
Alignment:
Q  172 aaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatg 225  Q
    |||||||||||| ||||| |||||| ||||| ||||||||| || |||||||||    
T  28955908 aaataaaatcatagatttgaatcttgaaaatacatatgcaagttgatcaaaatg 28955961  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 15259799 - 15259745
Alignment:
Q  172 aaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatga 226  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||  |||||||||    
T  15259799 aaataaattcatagatttaaatcttaaaaattcatatgcaaattgttcaaaatga 15259745  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 14510972 - 14511028
Alignment:
Q  167 tatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaa 223  Q
    |||||||||||||| || ||||| |||||| ||||||||||| |||||| |||||||    
T  14510972 tatcaaaataaaattatagatttgaatcttgaaaattcatatacaaatttatcaaaa 14511028  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 15825022 - 15824953
Alignment:
Q  154 cattaaaagttcgtatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaa 223  Q
    ||||||||| || |||||||||||||||||  |||||||| || ||||| ||||| |||| | |||||||    
T  15825022 cattaaaagctcatatcaaaataaaatcataaatttaaattttaaaaatccatatacaaacttatcaaaa 15824953  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 29981805 - 29981744
Alignment:
Q  168 atcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatgacaa 229  Q
    |||||||||||| ||| |||||||||||| ||||| |||||||| ||| ||| ||| |||||    
T  29981805 atcaaaataaaaccatagatttaaatcttgaaaatccatatgcagattgatcgaaaagacaa 29981744  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 43232 - 43279
Alignment:
Q  161 agttcgtatcaaaataaaatcattgatttaaatctttaaaattcatat 208  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||||||||    
T  43232 agttcatattaaaataaaatcattgatttgaatcttgaaaattcatat 43279  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 14465133 - 14465074
Alignment:
Q  164 tcgtatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaa 223  Q
    ||||||||||||||||||||  | || |||||| |||||||||||| ||||| |||||||    
T  14465133 tcgtatcaaaataaaatcataaactttaatcttgaaaattcatatgaaaattgatcaaaa 14465074  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 28554370 - 28554428
Alignment:
Q  171 aaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatgacaa 229  Q
    |||||||||||||  |||| |||||| |||||||||||| ||||  |||||||||||||    
T  28554370 aaaataaaatcatgaattttaatcttaaaaattcatatgtaaatggatcaaaatgacaa 28554428  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 11642751 - 11642714
Alignment:
Q  171 aaaataaaatcattgatttaaatctttaaaattcatat 208  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11642751 aaaataaaatcatagatttaaatcttgaaaattcatat 11642714  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 25106743 - 25106801
Alignment:
Q  167 tatcaaaataaaatcattgatttaaatctttaaaattcatatgcaaattcatcaaaatg 225  Q
    |||| |||| |||||||  ||||||||||| ||||| |||||||||||| |||||||||    
T  25106743 tatcgaaatgaaatcatatatttaaatcttgaaaatccatatgcaaattgatcaaaatg 25106801  T

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