View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_low_11 (Length: 258)
Name: NF4488_low_11
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 43553841 - 43554073
Alignment:
| Q |
19 |
aaaattatctctccgtatgttgcacaggttaaaacactagttaaatatatttagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553841 |
aaaattatctctccgtatgttgcacaggttaaaacactagttaaatatatttagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaa |
43553940 |
T |
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| Q |
119 |
gatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553941 |
gatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatct |
43554040 |
T |
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| Q |
219 |
cacggctaaatgaaataccgtctcttcttctct |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43554041 |
cacggctaaatgaaataccgtctcttcttctct |
43554073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 43549840 - 43550072
Alignment:
| Q |
19 |
aaaattatctctccgtatgttgcacaggttaaaacactagttaaatatatttagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaa |
118 |
Q |
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|||||||| || ||||| ||||||||| |||||||||||||||||||||| ||| ||| ||| || ||||||||||||||||||||||||||||||| | |
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| T |
43549840 |
aaaattatttccccgtacgttgcacagaataaaacactagttaaatatattcagagctcacataaacttctcaccttatggcgaccgcctgaaactgcga |
43549939 |
T |
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| Q |
119 |
gatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatct |
218 |
Q |
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||||||||||| ||||||||||| ||||||| | ||||| ||| |||||||||| || |||| |||||||||||| ||||| ||||| ||||||||||| |
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| T |
43549940 |
gatgtaagacagtgttgccatatttatcttgtctgtgcactagatttgtaccataggcaactctcaccaagaaaactaaagcgtcataacatccatatct |
43550039 |
T |
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| Q |
219 |
cacggctaaatgaaataccgtctcttcttctct |
251 |
Q |
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||| |||| ||||| ||| |||||||||||||| |
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| T |
43550040 |
cacagctagatgaagtactgtctcttcttctct |
43550072 |
T |
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