View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_low_4 (Length: 439)
Name: NF4488_low_4
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 33390435 - 33390861
Alignment:
| Q |
13 |
tgattagggtttaatatacgagaatggtgattttacatcttttgtagctttcataaataaatgatagacggtattaaggttgtacaattcgtttaacaaa |
112 |
Q |
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| T |
33390435 |
tgattagggtttaatatatgagaatggtgattttacatcttttttagctttcatagataaatgatagacggtattaaggttgtacaattcgcttaacaaa |
33390534 |
T |
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| Q |
113 |
tttaaggctagattgaaagacggttttttagatggcaaagactttactttgaaggaatgccaattcgcgaagtgaaaatacattcaatttattaaatttg |
212 |
Q |
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| T |
33390535 |
tttaaggctgaactgaaagacggttttttagatggcaaagacttcactttgaaggaatgtcaatttgcgaagtgaaaatacattccacttattaaatttg |
33390634 |
T |
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| Q |
213 |
cacttaccttgtcattataattgggtcggtaggtgccaacattagaattcattctactttttccaaagtt--------------agggagagagggcaag |
298 |
Q |
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| T |
33390635 |
cacttacctcgtcattgtaattgggtcggtaggtgccaacattagaattcattctactttttccaaagttagggaaagtgagcaagggagagagggcaag |
33390734 |
T |
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| Q |
299 |
attgaaagagtcctgtggaatcatatgtaacaatcaatctcttttcatctcaatgtgtatttgtaatgttattatgtgtaaccaattctctcttttgtta |
398 |
Q |
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| T |
33390735 |
attgaaagagtcttgtggaatcatatgtagcaatcaatctcttttcatctcaatatgtatttgtaatgttattatgtgtaaccaattctctcttttgcta |
33390834 |
T |
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| Q |
399 |
gaattagctaaaactaatcattatctt |
425 |
Q |
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| T |
33390835 |
gaattagctaaaactaatcattatctt |
33390861 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 527584 - 527552
Alignment:
| Q |
373 |
tgtgtaaccaattctctcttttgttagaattag |
405 |
Q |
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| T |
527584 |
tgtgtaactaattctctcttttgttagaattag |
527552 |
T |
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