View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_low_7 (Length: 319)
Name: NF4488_low_7
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 32127321 - 32127621
Alignment:
| Q |
1 |
cgcccatggttatgtgcaaatatttataaccatttcaatgtaacttttatgcatgcatgccttttaacttcaactattatttagtactagatctcacacc |
100 |
Q |
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| T |
32127321 |
cgcccatggttatgtgcaaatatttataaccatttcaatgtaacttttatgcatgcatgccttttaacttcaactattatttagtactagatctcacacc |
32127420 |
T |
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| Q |
101 |
acgacaaaacgtcacacgcacggcccgtgctgtaccacgggttatcgagtagtttcccctttgaaaggctaaaactaaggtacaaaaaatcatttgaatt |
200 |
Q |
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| T |
32127421 |
acgacaaaacgtcacacgcacggcccgtgctgtaccacgggttatcgactagtttcccctttgaaaggctaaaactaaggtacaaaaaatcatttgaatt |
32127520 |
T |
|
| Q |
201 |
ttccatgaaaatcataacaaggaagtttgcttatatcctcgtagttaattagacgatcatatcatagaattagatctattattcattatgatatagaaaa |
300 |
Q |
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| T |
32127521 |
ttccatgaaaatcataacaaggaagtttgcttatatcctcgtagttaattagacgatcatatcatagaattagatctattattcattatgatatagaaaa |
32127620 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
32127621 |
t |
32127621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 32147838 - 32147889
Alignment:
| Q |
250 |
tagacgatcatatcatagaattagatctattattcattatgatatagaaaat |
301 |
Q |
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| T |
32147838 |
tagacgatgatatcatagaattagatccattgttcattatgatatagaaaat |
32147889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 5521199 - 5521131
Alignment:
| Q |
157 |
ccctttgaaaggctaaaactaaggtacaaaaaatcatttgaattttccatgaaaatcataacaaggaagt |
226 |
Q |
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| T |
5521199 |
ccctttcaaaggctaaaactaaggtaaaaaaaaccatttgaattttcca-aaaaatcataacaaggaagt |
5521131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 29580258 - 29580317
Alignment:
| Q |
57 |
atgccttttaacttcaactattatttagtactagatctcacaccacgacaaaacgtcacac |
117 |
Q |
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|||||||||| ||| ||||||||||||||| | ||||||||||||| |||||| |||||| |
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| T |
29580258 |
atgccttttacctt-aactattatttagtattgaatctcacaccacggcaaaacttcacac |
29580317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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