View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4488_low_9 (Length: 289)
Name: NF4488_low_9
Description: NF4488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4488_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 30958580 - 30958843
Alignment:
| Q |
10 |
gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatc |
109 |
Q |
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| T |
30958580 |
gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaacc |
30958679 |
T |
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| Q |
110 |
atttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaa |
209 |
Q |
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|||| | ||| |||| | | || | | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
30958680 |
attttaccttaactgtaaggaaaataacatcactaccattctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaa |
30958779 |
T |
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| Q |
210 |
ctcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttc |
273 |
Q |
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| T |
30958780 |
ctaaaaagaacagaccttgatcaaaatctttgttctcctcaatataattatacttatttgtttc |
30958843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 31012389 - 31012651
Alignment:
| Q |
14 |
agacatcaaaaacttctacaactgcggaagaatca---ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatca |
110 |
Q |
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| T |
31012389 |
agacatcaaaaactcttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccg |
31012488 |
T |
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| Q |
111 |
tttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaac |
210 |
Q |
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| T |
31012489 |
tatcacctttactgccacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaac |
31012588 |
T |
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| Q |
211 |
tcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttc |
273 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
31012589 |
tcaaaagaacagaccttgatcaaaatctttgttctcctcaatataatgatacttatttgtttc |
31012651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 273
Target Start/End: Complemental strand, 15523394 - 15523170
Alignment:
| Q |
49 |
ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat |
148 |
Q |
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| T |
15523394 |
ccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccaccat |
15523295 |
T |
|
| Q |
149 |
tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct |
248 |
Q |
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||| ||||| ||||||||||||||||||||||| || |||| || | |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
15523294 |
tctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcct |
15523195 |
T |
|
| Q |
249 |
caatatgatgatacttatttgtttc |
273 |
Q |
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||| | |||||||||||||||||| |
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| T |
15523194 |
aaatttaatgatacttatttgtttc |
15523170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 31001966 - 31002096
Alignment:
| Q |
140 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
239 |
Q |
| |
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||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||| |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
31001966 |
tactaccattctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctt |
31002062 |
T |
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| Q |
240 |
tgttctcctcaatatgatgatacttatttgtttc |
273 |
Q |
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||||||||| | | || ||||||||||||||||| |
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| T |
31002063 |
tgttctcctaagtttgttgatacttatttgtttc |
31002096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 30664093 - 30663988
Alignment:
| Q |
159 |
tcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatg |
258 |
Q |
| |
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||||||||||||| |||||| | || |||| | ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
30664093 |
tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatg |
30663994 |
T |
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| Q |
259 |
atactt |
264 |
Q |
| |
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|||||| |
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| T |
30663993 |
atactt |
30663988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 31221752 - 31221876
Alignment:
| Q |
140 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
239 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||| |||||||||||||| || |||||||||||| |||||| | |
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| T |
31221752 |
tactaccattctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttt |
31221851 |
T |
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| Q |
240 |
tgttctcctcaatatgatgatactt |
264 |
Q |
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|||||||||||||| ||||||||| |
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| T |
31221852 |
tgttctcctcaatacaatgatactt |
31221876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 15493361 - 15493427
Alignment:
| Q |
204 |
atcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgt |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
15493361 |
atcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatacttatttgt |
15493427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 15493062 - 15493132
Alignment:
| Q |
14 |
agacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc |
84 |
Q |
| |
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||||||||| |||| ||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||||| |
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| T |
15493062 |
agacatcaagaactcctacaactgtggaaatatctccaacatctcttatccattctggggacaaagtcgtc |
15493132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31001838 - 31001910
Alignment:
| Q |
12 |
agagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc |
84 |
Q |
| |
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|||||||| ||||| | ||| ||||| |||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
31001838 |
agagacataaaaaattcctataactgtggaaatctcaccaacatctcttatccattctggggaaaaaatcgtc |
31001910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 30943437 - 30943469
Alignment:
| Q |
125 |
ccataacaaccaaaatactaccattctgttatc |
157 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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| T |
30943437 |
ccataacaaccaaaacactaccattctgttatc |
30943469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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