View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4489-Insertion-1 (Length: 773)
Name: NF4489-Insertion-1
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489-Insertion-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 7699208 - 7699637
Alignment:
| Q |
8 |
taaaattcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7699208 |
taaaattcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagtt |
7699307 |
T |
|
| Q |
108 |
ggtggtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| || ||| | ||||||| |
|
|
| T |
7699308 |
ggtggtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtgggacaaaaattagcaccatgaaatctttctcagtgttgc |
7699407 |
T |
|
| Q |
208 |
atagttccatattcaaaccacttgttagagattttgtgaagaaggcttctgatnnnnnnntaaagaaagtggcattagtggcaccatttggagcatgttt |
307 |
Q |
| |
|
||||||| || | | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7699408 |
atagttcaatttatagtactcttgttagagattttgtgaagaaggcttctgataaaaaaataaagaaagtggcattagtggcaccatttggagcatgttt |
7699507 |
T |
|
| Q |
308 |
tgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7699508 |
tgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaat |
7699607 |
T |
|
| Q |
408 |
tcaatggtgttggtgaataaaaaggtagca |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7699608 |
tcaatggtgttggtgaataaaaaggtagca |
7699637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 7733541 - 7733970
Alignment:
| Q |
8 |
taaaattcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagtt |
107 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
7733541 |
taaagttcctcttgttattaatccctttagcactgctccaatatttaccgatggtgatgcttcttatgaatactttattgatgtgaaatcaattaaagtt |
7733640 |
T |
|
| Q |
108 |
ggtggtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgc |
207 |
Q |
| |
|
||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733641 |
ggtggtgaagttctgagcttcaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgc |
7733740 |
T |
|
| Q |
208 |
atagttccatattcaaaccacttgttagagattttgtgaagaaggcttctgatnnnnnnntaaagaaagtggcattagtggcaccatttggagcatgttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
7733741 |
atagttccatattcaaaccacttgttagagattttactaagaaggcttctgataaaaaaataaagaaagtggcatcagtggcaccatttgatacatgttt |
7733840 |
T |
|
| Q |
308 |
tgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaat |
407 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||| || ||||||| |||||| ||| |||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
7733841 |
tgatttgagcactattggtaagactaatactggattggatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttggtggaaat |
7733940 |
T |
|
| Q |
408 |
tcaatggtgttggtgaataaaaaggtagca |
437 |
Q |
| |
|
|| ||||| ||||||| |||||| |||||| |
|
|
| T |
7733941 |
tctatggtcttggtgagtaaaaatgtagca |
7733970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 7746357 - 7745932
Alignment:
| Q |
12 |
attcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagttggtg |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7746357 |
attcctcttattattaacccctttagcactgctccaatattttcccaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagttggtg |
7746258 |
T |
|
| Q |
112 |
gtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgcatag |
211 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
7746257 |
gtgaaattgttagctttaagtcttccattttgtccattgacaataagggaaatggtggaacaaaacttagcacagtgaagaacttcactgtgttacatag |
7746158 |
T |
|
| Q |
212 |
ttccatattcaaaccacttgttagagattttgtgaagaaggcttctgatnnnnnnntaaagaaagtggcattagtggcaccatttggagcatgttttgat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
7746157 |
ttccatattcaaaccacttgttagagattttactaagaaggcttctgataataaaataaagaaagtggcatcagtggcaccatttgaaacatgttttgat |
7746058 |
T |
|
| Q |
312 |
tttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaattcaa |
411 |
Q |
| |
|
|| || || || |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| ||||||||||| | |
|
|
| T |
7746057 |
ttgagtactatgcgtaggactaatactggattggatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattcta |
7745958 |
T |
|
| Q |
412 |
tggtgttggtgaataaaaaggtagca |
437 |
Q |
| |
|
||| ||||||| |||||| |||||| |
|
|
| T |
7745957 |
tggccttggtgagtaaaaatgtagca |
7745932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 7711235 - 7711653
Alignment:
| Q |
12 |
attcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagttggtg |
111 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7711235 |
attcctcttattattaacccctttagcactgctccaatatttactgaaggtgatgcttcttatgaatactttattgatgtgaaatcaattaaagttggtg |
7711334 |
T |
|
| Q |
112 |
gtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgcatag |
211 |
Q |
| |
|
||||| |||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7711335 |
gtgaagttctgagcttcaagtcctcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgtttcatag |
7711434 |
T |
|
| Q |
212 |
ttccatattcaaaccacttgttagagattttgtgaagaaggcttctgatnnnnnnntaaagaaagtggcattagtggcaccatttggagcatgttttgat |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||| ||| |||||||||||||| | ||||||||||| |
|
|
| T |
7711435 |
ttccatattgaaaccacttgttagagattttaataagaaggcctctgataaaaaaattaagaaagtgtcatcagtggcaccatttgaaacatgttttgat |
7711534 |
T |
|
| Q |
312 |
tttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaattcaa |
411 |
Q |
| |
|
|| ||||| ||||||||| ||||| ||||||||||||| || ||||||| |||||| ||| |||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
7711535 |
ttgagcactattggtaggtctaatgctggattggatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttggtggaaattcaa |
7711634 |
T |
|
| Q |
412 |
tggtgttggtgaataaaaa |
430 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
7711635 |
tggtgttggtgagtaaaaa |
7711653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 7726119 - 7726541
Alignment:
| Q |
8 |
taaaattcctcttgttattaacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagtt |
107 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
7726119 |
taaagttcctcttgttattaatccctttagcactgctccaatatttaccgaaggtgatgcttcttatgaatactttattgatgtgaaatcaattaaagtt |
7726218 |
T |
|
| Q |
108 |
ggtggtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgc |
207 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
7726219 |
ggtggtgaagttctgaacttcaagtcttcccttttgtccattgacaataagggaaatggcggaacaaaacttagcacaatgaatcccttcactgttttgc |
7726318 |
T |
|
| Q |
208 |
atagttccatattcaaaccacttgttagagattttgtgaagaaggcttctgatnnnnnnntaaagaaagtggcattagtggcaccatttggagcatgttt |
307 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
7726319 |
atagttccatactgaaaccacttgttagagattttactaagaaggcttctgataaaaaaataaagaaagtgtcatcagtggcaccatttgatacatgttt |
7726418 |
T |
|
| Q |
308 |
tgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaat |
407 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||| || |||||| |||||| ||| |||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
7726419 |
tgatttgagcactattggtaagactaatactggattggatgtgcctactattagtttggtgctagaaggtggtgtggagtggataattttcggtggaaat |
7726518 |
T |
|
| Q |
408 |
tcaatggtgttggtgaataaaaa |
430 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
7726519 |
tcaatggttttggtgaataaaaa |
7726541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 7703933 - 7704126
Alignment:
| Q |
27 |
aacccctttagcactgctccaatatttactaaaggtgatgcttcttatgaatatttcattgatgtgaaatcaattaaagttggtggtgaaattcttaact |
126 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | || |||| |||| |
|
|
| T |
7703933 |
aacccctttagcactgctccaatatctggtaaaggtgatgctttttatgaatatttaattgatgtgaaatcaattaaagttggttgcaaagttctcaact |
7704032 |
T |
|
| Q |
127 |
ttaagtcttcccttttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtccttcactgtgttgcatagttccatatt |
220 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| | |||||||||||||| ||| ||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
7704033 |
ttaagtcttccattttgcccatggacaataaggaatatggtggaacaaaatttaccaccatgaagtccttcacagtgttgcatagttctatatt |
7704126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 268 - 437
Target Start/End: Original strand, 7704165 - 7704338
Alignment:
| Q |
268 |
taaagaaagtggcattagtggcaccatttggagcatgttttgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggt |
367 |
Q |
| |
|
||||| ||||||||| |||| ||| ||||||||||||||||||||| || | ||||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
7704165 |
taaagcaagtggcatcagtgacacaatttggagcatgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggt |
7704264 |
T |
|
| Q |
368 |
tctacaaggtggtgtagagtggaca----atttacggtggaaattcaatggtgttggtgaataaaaaggtagca |
437 |
Q |
| |
|
||| || | ||||| |||||||| | || |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7704265 |
cctaaaaaggggtgtgaagtggacagtatgtatatggtggaaattcaatggtgttggtgaataaaaatgtagca |
7704338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 7749428 - 7749546
Alignment:
| Q |
63 |
gatgcttcttatgaatatttcattgatgtgaaatcaattaaagttggtggtgaaattcttaactttaagtcttcccttttgtccattgacaataagggaa |
162 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||| ||||||| ||| ||| ||| ||| ||| ||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
7749428 |
gatgcttcttatgagtacttcatagatgtgaaataaattaaaattgctggcaaaagtctcaacattaggtcttctcttttgtccattgacaacaagggaa |
7749527 |
T |
|
| Q |
163 |
atggtggaacaaaacttag |
181 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
7749528 |
aatgtggaacaaaaattag |
7749546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 449 - 773
Target Start/End: Complemental strand, 35409964 - 35409640
Alignment:
| Q |
449 |
tttgaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaa |
548 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409964 |
tttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaa |
35409865 |
T |
|
| Q |
549 |
ctaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtg |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409864 |
ctaaacacccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtg |
35409765 |
T |
|
| Q |
649 |
gatatgttccaatccggccacaattaatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttct |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409764 |
gatatgttccaatccggccacaattaatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttct |
35409665 |
T |
|
| Q |
749 |
atcatcactgccaagcttatttcag |
773 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35409664 |
atcatcactgccaagcttatttcag |
35409640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University