View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4489-Insertion-3 (Length: 440)

Name: NF4489-Insertion-3
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4489-Insertion-3
NF4489-Insertion-3
[»] chr3 (7 HSPs)
chr3 (82-438)||(24758403-24758761)
chr3 (82-438)||(24767400-24767758)
chr3 (344-439)||(53445806-53445902)
chr3 (10-82)||(24762018-24762090)
chr3 (194-242)||(53446018-53446066)
chr3 (282-322)||(53445924-53445964)
chr3 (335-410)||(29694008-29694084)
[»] chr4 (5 HSPs)
chr4 (323-440)||(28323340-28323458)
chr4 (335-384)||(47999246-47999296)
chr4 (194-238)||(28323084-28323128)
chr4 (282-322)||(28323187-28323227)
chr4 (282-320)||(47999076-47999114)
[»] chr1 (2 HSPs)
chr1 (67-152)||(42428705-42428790)
chr1 (200-240)||(32940712-32940752)
[»] chr7 (3 HSPs)
chr7 (335-424)||(41970793-41970883)
chr7 (282-322)||(41969890-41969930)
chr7 (194-238)||(41969788-41969832)
[»] chr2 (2 HSPs)
chr2 (335-440)||(42032413-42032519)
chr2 (199-241)||(37622844-37622886)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 438
Target Start/End: Complemental strand, 24758761 - 24758403
Alignment:
Q  82 ttgtttaccaaacccgttttattgatcacagtgaagtaggaccaatatttgcctgttctgtgcacttttacgttnnnnnnncaactt-cttcccctatag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||    
T  24758761 ttgtttaccaaacccgttttattgatcacagtgaagtaggaccaatatttgcctgttctgtgcacttttacgttaaaaaaacaactttcttcccctatag 24758662  T
Q  181 ac--gggcaaatcactcaccttgaaacatggtgtgacatttgccacatcagattattccccatannnnnnnnnnnccatataataaacttaaactaaata 278  Q
    ||  |||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||            |||||||||||||||||| |||||    
T  24758661 acaggggcgaatcactcaccttgaaacatggtgtggcacttgccacaccagattattccccatatttttttttt--catataataaacttaaaccaaata 24758564  T
Q  279 tgagctactttgacatgattatttacatggcttagcggtttgaggggaattgaacttttaaccattcaaatgaaacaaacatgcttaaa-caattagcta 377  Q
    | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24758563 taatatactttgacatgattatttacatggcttagcggtttgaggggaattgaacttttaaccattcaaatgaaacaaacatgcttaaaccaattagcta 24758464  T
Q  378 aagacttttagatgtcaaaatctcatctttttaatatataaaataatatattttgcttcat 438  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24758463 aaaacttttagatgtcaaaatctcatctttttagtatataaaataatatattttgcttcat 24758403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 438
Target Start/End: Complemental strand, 24767758 - 24767400
Alignment:
Q  82 ttgtttaccaaacccgttttattgatcacagtgaagtaggaccaatatttgcctgttctgtgcacttttacgttnnnnnnncaactt-cttcccctatag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||    
T  24767758 ttgtttaccaaacccgttttattgatcacagtgaagtaggaccaatatttgcctgttctgtgcacttttacgttaaaaaaacaactttcttcccctatag 24767659  T
Q  181 ac--gggcaaatcactcaccttgaaacatggtgtgacatttgccacatcagattattccccatannnnnnnnnnnccatataataaacttaaactaaata 278  Q
    ||  |||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||            |||||||||||||||||| |||||    
T  24767658 acaggggcgaatcactcaccttgaaacatggtgtggcacttgccacaccagattattccccatatttttttttt--catataataaacttaaaccaaata 24767561  T
Q  279 tgagctactttgacatgattatttacatggcttagcggtttgaggggaattgaacttttaaccattcaaatgaaacaaacatgcttaaa-caattagcta 377  Q
    | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24767560 taatatactttgacatgattatttacatggcttagcggtttgaggggaattgaacttttaaccattcaaatgaaacaaacatgcttaaaccaattagcta 24767461  T
Q  378 aagacttttagatgtcaaaatctcatctttttaatatataaaataatatattttgcttcat 438  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24767460 aaaacttttagatgtcaaaatctcatctttttagtatataaaataatatattttgcttcat 24767400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 344 - 439
Target Start/End: Complemental strand, 53445902 - 53445806
Alignment:
Q  344 tcaaatgaaacaaacatgcttaaa-caattagctaaagacttttagatgtcaaaatctcatctttttaatatataaaataatatattttgcttcata 439  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  53445902 tcaaatgaaacaaacatgcttaaatcaattaactaaagacttttagatgtcaaaatctcatctttttagtatataaagtaatatattttgcttcata 53445806  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 24762090 - 24762018
Alignment:
Q  10 tagcatgtgaatgattgagtggacccttgatgatgtaggagatggattattgccaaattattagaattagaat 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24762090 tagcatgtgaatgattgagtggagccttgatgatgtaggagatggattattgccaaattattagaattagaat 24762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 53446066 - 53446018
Alignment:
Q  194 tcaccttgaaacatggtgtgacatttgccacatcagattattccccata 242  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||    
T  53446066 tcaccttgaaacatggtgtggcacttgccacaccagattattccccata 53446018  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 53445964 - 53445924
Alignment:
Q  282 gctactttgacatgattatttacatggcttagcggtttgag 322  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  53445964 gctactttgacatgattatttacatgtcctagcggtttgag 53445924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 29694084 - 29694008
Alignment:
Q  335 tttaaccattcaaatgaaacaaacatgcttaaac-aattagctaaagacttttagatgtcaaaatctcatcttttta 410  Q
    |||||||||||| ||||||  | |||| |||||| |||| ||| |||  |||||||||||||||| |||||||||||    
T  29694084 tttaaccattcagatgaaatgagcatgtttaaaccaatttgctgaagcgttttagatgtcaaaatttcatcttttta 29694008  T

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Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 28323340 - 28323458
Alignment:
Q  323 gggaattgaacttttaaccattcaaatgaaacaaacatgcttaaac-aattagctaaagacttttagatgtcaaaatctcatctttttaatatataaaat 421  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||| |    
T  28323340 gggaatcgaacatttaaccattcaaatgaaacagacatgcttaaaccaatttactaaagacttttagatgtcaaaatctcatctttttagtatataaagt 28323439  T
Q  422 aatatattttgcttcatag 440  Q
    |||||||||||||||||||    
T  28323440 aatatattttgcttcatag 28323458  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 47999246 - 47999296
Alignment:
Q  335 tttaaccattcaaatgaaacaaacatgcttaaa-caattagctaaagactt 384  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47999246 tttaaccattcaaatgaaacaaacatgcttaaaccaattagctaaagactt 47999296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 28323084 - 28323128
Alignment:
Q  194 tcaccttgaaacatggtgtgacatttgccacatcagattattccc 238  Q
    |||||||||||||||||||| || |||||||| ||||||||||||    
T  28323084 tcaccttgaaacatggtgtggcacttgccacaccagattattccc 28323128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 28323187 - 28323227
Alignment:
Q  282 gctactttgacatgattatttacatggcttagcggtttgag 322  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  28323187 gctactttgacatgattatttacatggcctagtggtttgag 28323227  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 47999076 - 47999114
Alignment:
Q  282 gctactttgacatgattatttacatggcttagcggtttg 320  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  47999076 gctactttgatatgattatttacatggcctagcggtttg 47999114  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 42428790 - 42428705
Alignment:
Q  67 ttattagaattagaattgtttaccaaacccgttttattgatcacagtgaagtaggaccaatatttgcctgttctgtgcacttttac 152  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  42428790 ttattagaattagaattgttcaccaaacctgttttattaatcacagtgaagtagcaccaatatttgcctgttctgtgctcttttac 42428705  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 32940712 - 32940752
Alignment:
Q  200 tgaaacatggtgtgacatttgccacatcagattattcccca 240  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  32940712 tgaaacatggtgtggcagttgccacaccagattattcccca 32940752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 41970793 - 41970883
Alignment:
Q  335 tttaaccattcaaatgaaacaaacatgcttaaac-aattagctaaagactttta-gatgtcaaaatctcatctttttaatatataaaataat 424  Q
    ||||| || ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||    
T  41970793 tttaatcaatcaaatgaatcaaacatgcttaaaccaattagctaaagacttttaagatgtcaaaatctcatcttttt-atatataaattaat 41970883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 41969890 - 41969930
Alignment:
Q  282 gctactttgacatgattatttacatggcttagcggtttgag 322  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  41969890 gctactttgacatgattatttacatggcctagcggtttgag 41969930  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 41969788 - 41969832
Alignment:
Q  194 tcaccttgaaacatggtgtgacatttgccacatcagattattccc 238  Q
    |||||||||||||||||||| || |||||||| ||||||||||||    
T  41969788 tcaccttgaaacatggtgtggcacttgccacaccagattattccc 41969832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 42032519 - 42032413
Alignment:
Q  335 tttaaccattcaaatgaaacaaacatgcttaaac-aattagctaaagacttttagatgtcaaaatctcatctttttaatatataaaataatatattttgc 433  Q
    |||||||||| ||||||||  |||||| |||||| |||| ||| |||   |||| |||||||||| |||||||||||||||||| | ||||||| |||||    
T  42032519 tttaaccatttaaatgaaatgaacatgattaaaccaatttgctgaagcgctttaaatgtcaaaatttcatctttttaatatatatagtaatataatttgc 42032420  T
Q  434 ttcatag 440  Q
    |||||||    
T  42032419 ttcatag 42032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 37622844 - 37622886
Alignment:
Q  199 ttgaaacatggtgtgacatttgccacatcagattattccccat 241  Q
    |||||||||||||||||| |||||||| ||||||||| |||||    
T  37622844 ttgaaacatggtgtgacacttgccacaccagattattacccat 37622886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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