View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_high_1 (Length: 393)
Name: NF4489_high_1
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 130 - 338
Target Start/End: Complemental strand, 36542744 - 36542536
Alignment:
| Q |
130 |
aacacgctacgttgttttgtttgcatatacgacatagtgacttttaggtgagctaagcttcaaacactcactagagtcagatatacatcaagactcaaag |
229 |
Q |
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| T |
36542744 |
aacacgctatgttgttttgtttgcatatacgacatagtgactttttggtgcgctaagcttcaaacactcactagagtcagatatacatcaagactaaaag |
36542645 |
T |
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| Q |
230 |
aaatatacgtacaaatcacattgtaggtgagtcaactctgtgttaaactttaatagtttgctga--nnnnnnnnnnaccaaaataatattcttctacatt |
327 |
Q |
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| T |
36542644 |
aaatatacgtacaaatcacattgcaggtgagtcaactc--tgttaaattttaatagtttgctgattttttttttttaccaaaataatattcttctacatt |
36542547 |
T |
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| Q |
328 |
aagtttgctga |
338 |
Q |
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| T |
36542546 |
aagtttgctga |
36542536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 36542858 - 36542811
Alignment:
| Q |
16 |
atgaacaatttatataaaaggacatctaaacacatccaataatattca |
63 |
Q |
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| T |
36542858 |
atgaacaatttatataaaaggacatttaaacacatccaataatattca |
36542811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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