View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_high_11 (Length: 213)
Name: NF4489_high_11
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_high_11 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 31044820 - 31045001
Alignment:
| Q |
17 |
aaaagcaacacaatggtgaatcacattgctgagatatgcctcagtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaacattaccaacaat |
116 |
Q |
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| T |
31044820 |
aaaagcaacacaatggtgaatcacattgctgagatatgcctcagtgaaacgaaacctcagaaaaatcaaaagctcaatcagcacgaacattaccaacaat |
31044919 |
T |
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| Q |
117 |
ggagaagaagatgaaatctcaacaacatcactgtgaatttagaatgaattgagaaaatactcatgatattacaaaccctatg |
198 |
Q |
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| T |
31044920 |
ggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattgagaaaatactcatgatactacaaaccctatg |
31045001 |
T |
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Target: scaffold0202 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 18511 - 18332
Alignment:
| Q |
17 |
aaaagcaacacaatggtgaatcacattgctgagatatgcctcagtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaacattacc-aacaa |
115 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
18511 |
aaaagcaacacaatggtgatacacattgctgagatatacctcagtgaaacgaaacctcggaaaaatcaaaagctcaatcagcacgaacatgaccaaacaa |
18412 |
T |
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| Q |
116 |
tggagaagaagatgaaatctcaacaacatcactgtgaatttagaatgaattgagaaaatactcatgatattacaaaccct |
195 |
Q |
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| T |
18411 |
tggagaagcagatgaaatctcagcaagatcactttgaatgcagaatgaattgagaaaatactcatgatattgcaaaccct |
18332 |
T |
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Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 172477 - 172391
Alignment:
| Q |
110 |
caacaatggagaagaagatgaaatctcaacaacatcactgtgaatttagaatgaattgagaaaatactcatgatattacaaacccta |
196 |
Q |
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| T |
172477 |
caacaatggagaagcggatgaaatctcagcaagatcaccgtgaatgcgggatgaattaagaaaatactcatgatattacaaatccta |
172391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 172598 - 172505
Alignment:
| Q |
17 |
aaaagcaacacaatggtgaatcacattgctgagatatg-----cctcagtgaaacaaaacctcagaaaaatcaaaagctcaatcagcacgaaca |
105 |
Q |
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||||| || |||||||||| ||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||| ||||||||| |
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| T |
172598 |
aaaagaaatacaatggtgattcacattgctgagatataatatacctcagtgaaacgatacctcggaaaaatcaaaagctcaatcggcacgaaca |
172505 |
T |
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