View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_high_2 (Length: 370)
Name: NF4489_high_2
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 45525054 - 45525397
Alignment:
| Q |
18 |
atatctacctcactcatacggataattccactatcactttgaagtggtcttaaactatatctaaaatttacagtgagctgagttcatccaatacattcct |
117 |
Q |
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| T |
45525054 |
atatctacctcactcatacggataattccactatcactttgtagtggtcttaaactatatctaaaatttacagtgagctgagttcatccaatacattcct |
45525153 |
T |
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| Q |
118 |
ttaaagtcacgataacccaaattatagaataatgccacaatgtcaaaataatttactagatcaacatctattgaaggcacactatttgagttccatatta |
217 |
Q |
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| T |
45525154 |
ttaaagtcacgataacccaaattatagaataatgccacaatgtcaaaataatttactagatcaacatctattgaaggcacactatttgagttccatatta |
45525253 |
T |
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| Q |
218 |
ttatctcttcagagatacactcaaactccatcccatgttctagtttaacttggccaaatcaaaaaagcgagttaaacacaaataatatagattttgttcc |
317 |
Q |
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| T |
45525254 |
ttatctcttcagagatacactcaaactccatcccatgttctagtttaacttggccaaatcaaaaaagcgagttaaacacaaataatatagattttgttcc |
45525353 |
T |
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| Q |
318 |
cattttcatcgtagattcaaaagccttcaaatactcagaataat |
361 |
Q |
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| T |
45525354 |
cattttcatcgtagattcaaaagtcttcaaatactcagaataat |
45525397 |
T |
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