View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_high_3 (Length: 368)
Name: NF4489_high_3
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 35837026 - 35837370
Alignment:
| Q |
1 |
ttggactaactttgacagctcagtcaatgctgtttcctttggctttgtagctactgctattctcatttccatgttcttagtcatggctatttttgagaga |
100 |
Q |
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| T |
35837026 |
ttggactaactttgacagctcagtcaatgctgtttcctttggctttgtagctactgctattctcatttccatgttcttagtcatggctatttttgagaga |
35837125 |
T |
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| Q |
101 |
tttcttagacccatttctccacctatgtccccgcctggtcgccggagtcagcgtgatgttgagtctcagatgagttcatatggcaagctctctcacccat |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35837126 |
tttcttagacccatttctccacctatgtcgccgcctggtcgccggagtcagcgtgatgttgagtctcagatgagttcatatggcaagctctctcacccat |
35837225 |
T |
|
| Q |
201 |
caccaaaagtaagtataatcactaaatattattgtatttttcttctttaatttggttccagtaattaaacaagcccttcaa-tttttagcattaaaactg |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35837226 |
caccaaaagtaagtataatcactaaatattattgtttttttcttcttttatttggttccagtaattaaacaagcccttcaattttttagcattaaaactg |
35837325 |
T |
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| Q |
300 |
gtttctttg-nnnnnnnagtttaactgacaatgtggtactgttgg |
343 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
35837326 |
gtttctttgttttttttagtttaactgacaatgtggtactgttgg |
35837370 |
T |
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