View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4489_high_5 (Length: 269)
Name: NF4489_high_5
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 35409542 - 35409302
Alignment:
| Q |
19 |
aatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409542 |
aatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccg |
35409443 |
T |
|
| Q |
119 |
atgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagttt |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409442 |
atgtggccatggagtttcaccatatgaattgttaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagttt |
35409343 |
T |
|
| Q |
219 |
aatatgcgaagaaagaccagccacggaatatcacacctttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409342 |
aatatgcgaagaaagaccagccacggaatatcacacctttg |
35409302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 35408180 - 35407975
Alignment:
| Q |
19 |
aatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
35408180 |
aatctgagatcattgatgcattcaaccaattttcaatggacatgaaaaatattgagaaggagattgacagaagaaatatcgatccaaaacttaggaatcg |
35408081 |
T |
|
| Q |
119 |
atgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagttt |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| ||||| ||||| || |||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
35408080 |
atgtggccatggagtttcaccatatgaactgcttataccaagctcgggatgcggtgccactggacgatgggtgccaaatagtgcaacagcctagcagttt |
35407981 |
T |
|
| Q |
219 |
aatatg |
224 |
Q |
| |
|
|||||| |
|
|
| T |
35407980 |
aatatg |
35407975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University