View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_low_10 (Length: 243)
Name: NF4489_low_10
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 31613489 - 31613706
Alignment:
| Q |
8 |
tcgattacaatttttaaaattttcaatctcttgtttagcactatattgacccctaagtcgactacaaattaacaattcttcttttgatacaaaaattaac |
107 |
Q |
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| T |
31613489 |
tcgattacaatttttaaaattttcaatctcttgtttagcactacatcggccccaaagtcgactacaaattaacaattcttcttttgatacgaaaattaac |
31613588 |
T |
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| Q |
108 |
aaatttttagtatcacatagtgcatgtgaaaacatacagccacctggtcttgaccgaagtcggtaatcttttcaattgtactc-tttaatgcaaacacta |
206 |
Q |
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| T |
31613589 |
aaatttttagtat--catagtgcatgtgaaaatatagagccgcctgatcgtgaccgatgtcggtaatcttttcgattgtactcttttaatccaaacacta |
31613686 |
T |
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| Q |
207 |
aaactatgcttactggaaag |
226 |
Q |
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|||||||||||||||||||| |
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| T |
31613687 |
aaactatgcttactggaaag |
31613706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 31608863 - 31609073
Alignment:
| Q |
16 |
aatttttaaaattttcaatctcttgtttagcactatattgacccctaagtcgactacaaattaacaattcttcttttgatacaaaaattaacaaattttt |
115 |
Q |
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||||||| ||||||||||||||||||||||||||| | | || ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
31608863 |
aattttttaaattttcaatctcttgtttagcactacaccggcctctaagtcgactacaaatcaacaattcttcttttgatatgaaaattaataaattttt |
31608962 |
T |
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| Q |
116 |
agtatcacatagtgcatgtgaaaacatacagccacctggtcttgaccgaag-tcggtaatcttttcaattgtactc-tttaatgcaaacactaaaactat |
213 |
Q |
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| T |
31608963 |
agtat--catagtgcatgtgaaaacgtagagccgcctggtcgtgagcgaagctgggtaatcttttcggtgatactcttttaatgcaaacactaaaactat |
31609060 |
T |
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| Q |
214 |
gcttactggaaag |
226 |
Q |
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||||||| ||||| |
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| T |
31609061 |
gcttactagaaag |
31609073 |
T |
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