View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_low_11 (Length: 238)
Name: NF4489_low_11
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20872128 - 20871909
Alignment:
| Q |
1 |
aacaaatgctgccaaacatgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctataacaactagaaaactcaagaaggaaatc |
100 |
Q |
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| T |
20872128 |
aacaaatgctgccaaacatgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctataacaactggaaaactcaagaaggaaatc |
20872029 |
T |
|
| Q |
101 |
caaaatgcccctagttgatgatgatgttactttaatattagcttactcttattgataatgtaattaattcaattgcattgtgacaattagggtactcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20872028 |
caaaatgcccctagttgatgatgatgttactttaatattagcttactcttattgataatgtaattaattcaattgcattgtgacaattagggtattcatc |
20871929 |
T |
|
| Q |
201 |
acaagttatttatgtgactt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
20871928 |
acaagttatttatgtgactt |
20871909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 35408898 - 35409002
Alignment:
| Q |
18 |
atgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctataacaactagaaaactcaagaaggaaatccaaaatgcccctagttg |
117 |
Q |
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|||||||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||||| ||||||| | |||||||| || || |||||||| || |
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| T |
35408898 |
atgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtccgtgctataacaactggaaaactaaggaaggaaaaccgaagtgcccctaattc |
35408997 |
T |
|
| Q |
118 |
atgat |
122 |
Q |
| |
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||||| |
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| T |
35408998 |
atgat |
35409002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 9843623 - 9843738
Alignment:
| Q |
15 |
aacatgtttgtgtgtcccatccggaacttatggtaa-caaggaagagtgtccatgctataacaactagaaaactcaaga-aggaaatccaaaatgcccct |
112 |
Q |
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||||||||||||||||||||| || ||||| |||| ||||||||||||||| ||||||||||||| || ||||||| | ||||||||| || ||||||| |
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| T |
9843623 |
aacatgtttgtgtgtcccatcagggacttagagtaaacaaggaagagtgtccgtgctataacaactggacaactcaaaagaggaaatccgaagtgcccct |
9843722 |
T |
|
| Q |
113 |
agttgatgatgatgtt |
128 |
Q |
| |
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| T |
9843723 |
aattgatgatgttgtt |
9843738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 16095258 - 16095324
Alignment:
| Q |
19 |
tgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctataacaactagaaaa |
85 |
Q |
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| T |
16095258 |
tgtttatgtgtcccatcgggaacatatggtaacaaggaagaatgtccatgctataataactggaaaa |
16095324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 16100192 - 16100270
Alignment:
| Q |
18 |
atgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctataacaactagaaaactcaagaagga |
96 |
Q |
| |
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|||||||||||||||||| ||||| |||||| |||||||||| |||||||||||| |||| ||||||||| |||||| |
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|
| T |
16100192 |
atgtttgtgtgtcccatcaggaacatatggtcacaaggaagaatgtccatgctatgctaacttgaaaactcatgaagga |
16100270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 16047041 - 16047095
Alignment:
| Q |
18 |
atgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctat |
72 |
Q |
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|||||||||||||||||| ||||| |||||| |||||||||| || ||||||||| |
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| T |
16047041 |
atgtttgtgtgtcccatcaggaacatatggtcacaaggaagaatgcccatgctat |
16047095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 16005906 - 16005853
Alignment:
| Q |
19 |
tgtttgtgtgtcccatccggaacttatggtaacaaggaagagtgtccatgctat |
72 |
Q |
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||||||||||| ||||| ||||| || ||||||||| |||| |||||||||||| |
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| T |
16005906 |
tgtttgtgtgttccatcgggaacatacggtaacaagcaagaatgtccatgctat |
16005853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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