View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4489_low_12 (Length: 236)
Name: NF4489_low_12
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_low_12 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31045152 - 31045378
Alignment:
| Q |
1 |
tcctaaagcctcaccaaacgaagttagcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaact |
100 |
Q |
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| T |
31045152 |
tcctaaagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaact |
31045251 |
T |
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| Q |
101 |
catgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045252 |
catgcaaacatgttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatt |
31045351 |
T |
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| Q |
201 |
taactctagacttctacaacttcatct |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31045352 |
taactctagacttctacaacttcatct |
31045378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 172189 - 172005
Alignment:
| Q |
32 |
atataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatatagccctctcttt |
131 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||| |
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| T |
172189 |
atataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaattcaatctcatgcaaacatgttcatataatcctctcttt |
172091 |
T |
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| Q |
132 |
ctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcaca-acatacatttaatttaactctagacttcta |
216 |
Q |
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|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||| ||||||| |
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| T |
172090 |
ctctgaaattccattgaattattagtacatatttcatccgtatccaattgtcacacacattcatttaattaaactctacacttcta |
172005 |
T |
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