View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4489_low_13 (Length: 222)
Name: NF4489_low_13
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4489_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 11583637 - 11583451
Alignment:
| Q |
7 |
gttgggctatttcatacttttggttatcatctggatgtgtaagcgttttgaatattcttcatttaagaaacaaaaacacaattagggattagattgtatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11583637 |
gttgggctatttcatacttttggttatcatctggatgtgtaagcgttttgaatattcttcatttaagaaacaaaaacacaattagggattagattgtatt |
11583538 |
T |
|
| Q |
107 |
gcaaagccaattgaatgacaagtttaaaagcaaaaatgaaacatacacaagccatgaagcacaaatcttaggacactagattcatct |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11583537 |
gcaaagccaattgaatgacaagtttaaaagcaaaaatgaaacatacacaagccatgaagcacaaatcttaggacactagattcatct |
11583451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 11597001 - 11596854
Alignment:
| Q |
44 |
tgtaagcgttttgaatattcttcatttaagaaacaaaaa-cacaattagggattagattgtattgcaaagccaattgaatgacaagtttaaaagcaaaaa |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
11597001 |
tgtaagcgttttgaatattcttcatttaagaaacaaaaaacacaattagggattatattgaattgtaaagccaattgaatgacaactttaaaagcagaaa |
11596902 |
T |
|
| Q |
143 |
tgaaacatacacaagccatgaagcacaaatcttaggacactagattca |
190 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
11596901 |
tgacacatacaaaagccattaagcacaaatcttaggacattagattca |
11596854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 11608772 - 11608722
Alignment:
| Q |
143 |
tgaaacatacacaagccatgaagcacaaatcttaggacactagattcatct |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11608772 |
tgaaacatacacaagccatgaagcacaaatcttaggacactagattcatct |
11608722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 11593592 - 11593475
Alignment:
| Q |
57 |
aatattcttcatttaagaaacaaaaac-acaattagggattagattgtattgcaaagccaatt-gaatgacaagtttaaaagcaaaaatgaaacatacac |
154 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||| ||||| ||| | ||||| ||||||||| ||| ||| |
|
|
| T |
11593592 |
aatattctttatttaacaaacaaaaaatacaattaggagagagattctattgcaagaccaatttgaatggcaaatgtaaaaacaaaaatgacacaaaca- |
11593494 |
T |
|
| Q |
155 |
aagccatgaagcacaaatct |
174 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11593493 |
-agccatgaagcacaaatct |
11593475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University