View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4489_low_4 (Length: 335)

Name: NF4489_low_4
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4489_low_4
NF4489_low_4
[»] chr6 (12 HSPs)
chr6 (18-335)||(25195609-25195925)
chr6 (22-95)||(4910906-4910979)
chr6 (18-67)||(17225878-17225927)
chr6 (20-99)||(6654102-6654181)
chr6 (24-80)||(7952725-7952781)
chr6 (46-97)||(765424-765475)
chr6 (20-77)||(19601457-19601514)
chr6 (18-66)||(1485156-1485204)
chr6 (17-73)||(3482066-3482122)
chr6 (31-95)||(5724653-5724717)
chr6 (18-66)||(31305857-31305905)
chr6 (18-66)||(34027427-34027475)
[»] chr8 (11 HSPs)
chr8 (18-97)||(15677825-15677905)
chr8 (18-97)||(26100156-26100235)
chr8 (18-93)||(32927892-32927967)
chr8 (17-80)||(35495003-35495066)
chr8 (18-80)||(4662913-4662975)
chr8 (18-95)||(13384664-13384741)
chr8 (24-97)||(32994258-32994331)
chr8 (18-95)||(38868496-38868573)
chr8 (18-97)||(18355860-18355937)
chr8 (17-54)||(33114793-33114830)
chr8 (18-95)||(44141060-44141137)
[»] chr4 (9 HSPs)
chr4 (18-98)||(32818380-32818460)
chr4 (23-95)||(8604637-8604709)
chr4 (23-97)||(30357508-30357582)
chr4 (18-72)||(42971912-42971966)
chr4 (26-74)||(45011893-45011941)
chr4 (19-97)||(21691223-21691301)
chr4 (26-64)||(35065092-35065130)
chr4 (18-80)||(49138773-49138835)
chr4 (22-66)||(4243414-4243458)
[»] chr7 (6 HSPs)
chr7 (18-99)||(41386825-41386906)
chr7 (18-67)||(40491604-40491653)
chr7 (18-73)||(45997707-45997763)
chr7 (19-96)||(31625420-31625495)
chr7 (286-335)||(18349803-18349852)
chr7 (20-73)||(42816480-42816533)
[»] chr1 (12 HSPs)
chr1 (20-97)||(11049246-11049323)
chr1 (18-76)||(7524130-7524188)
chr1 (18-80)||(30557517-30557577)
chr1 (18-80)||(1514356-1514418)
chr1 (18-97)||(7790652-7790731)
chr1 (18-97)||(28287346-28287425)
chr1 (17-83)||(40662990-40663054)
chr1 (29-95)||(28083909-28083975)
chr1 (249-318)||(2099659-2099728)
chr1 (18-83)||(3416090-3416155)
chr1 (36-77)||(51500862-51500903)
chr1 (16-64)||(17284125-17284173)
[»] chr5 (10 HSPs)
chr5 (20-95)||(6951317-6951392)
chr5 (18-95)||(9818732-9818810)
chr5 (18-97)||(22572414-22572493)
chr5 (18-72)||(370743-370797)
chr5 (18-95)||(18851092-18851169)
chr5 (18-95)||(38845441-38845518)
chr5 (18-97)||(42858104-42858183)
chr5 (18-67)||(18637310-18637357)
chr5 (22-94)||(22226250-22226322)
chr5 (18-74)||(28110448-28110504)
[»] chr2 (6 HSPs)
chr2 (28-95)||(42740975-42741042)
chr2 (283-335)||(32827542-32827594)
chr2 (18-97)||(33019166-33019245)
chr2 (20-62)||(11759871-11759913)
chr2 (18-64)||(33502266-33502312)
chr2 (27-93)||(42982544-42982610)
[»] chr3 (8 HSPs)
chr3 (18-76)||(32523350-32523408)
chr3 (18-97)||(52364047-52364126)
chr3 (18-72)||(31708249-31708303)
chr3 (23-73)||(50550594-50550644)
chr3 (19-64)||(4526161-4526206)
chr3 (46-99)||(40147888-40147941)
chr3 (20-72)||(31492788-31492839)
chr3 (18-66)||(46853544-46853592)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 25195925 - 25195609
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctgatttctgaaggcaaaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  25195925 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattctgatttctgaaggcaaaatca 25195826  T
Q  118 attttactagtactcaaaaacaatcaaaacatgtcagaatcaattttggcccctctagtaatggagcaaacttaagtttgaatttgtgtgtttagttatg 217  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  25195825 attttactattactcaaaaacaaccaaa-catgtcagaatcaattttggcccctctagtagtggagcaaacttaagtttgaatttgtgtgtttagttctg 25195727  T
Q  218 cagaattgattttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195726 cagaattgattttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatc 25195627  T
Q  318 acgtttggagtcaaaagc 335  Q
    ||||||||||||||||||    
T  25195626 acgtttggagtcaaaagc 25195609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 4910979 - 4910906
Alignment:
Q  22 gaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||||||||||||| |||  || |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  4910979 gaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 17225927 - 17225878
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 67  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  17225927 agttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagcta 17225878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 6654102 - 6654181
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 99  Q
    ||||||||||||||| |||||  || |||| |||||||| |||||||| |||||||||||| ||  ||||| ||||||||    
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctga 6654181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 7952725 - 7952781
Alignment:
Q  24 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    |||||||||||||||||  ||  ||||||||||||||||||||| ||||||| ||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgctt 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 765424 - 765475
Alignment:
Q  46 tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||||||    
T  765424 tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattct 765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19601457 - 19601514
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 77  Q
    ||||||||||||||| | |||| || ||| || ||||||||||||||| |||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatcctag 19601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 1485156 - 1485204
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 66  Q
    |||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  1485156 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 1485204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 3482122 - 3482066
Alignment:
Q  17 aagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 73  Q
    ||||||||||||||| ||||||||  || ||||||||| ||||||| |||| |||||    
T  3482122 aagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatc 3482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 5724653 - 5724717
Alignment:
Q  31 atttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||||||||| || |||||| |||||| ||||| || |||||||||||| ||  ||||||||||    
T  5724653 atttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31305857 - 31305905
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 66  Q
    |||||| | ||||||||| ||||| || |||||||||||||||||||||    
T  31305857 agttgatcaataaatttgagtgtataaatcaattctagaatcaaaagct 31305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 34027427 - 34027475
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 66  Q
    |||||||  ||||||||| ||||| || |||||||||||||||||||||    
T  34027427 agttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 15677825 - 15677905
Alignment:
Q  18 agttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  15677825 agttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 26100156 - 26100235
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||| |||||||    
T  26100156 agttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattct 26100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 32927967 - 32927892
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 93  Q
    |||||||||||||||||||||||| || | ||||||| |||||||||||| |||||||||||| ||  ||||||||    
T  32927967 agttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 35495066 - 35495003
Alignment:
Q  17 aagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    ||||||||||||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  35495066 aagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagctt 35495003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 4662913 - 4662975
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    |||||||||||| ||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  4662913 agttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagctt 4662975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 13384664 - 13384741
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||| ||||  |||||| ||  ||||||||||    
T  13384664 agttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 32994258 - 32994331
Alignment:
Q  24 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||||||||| || || ||||||||||| |||||||||| ||||| |||||| ||  ||||||||||||    
T  32994258 actataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 38868573 - 38868496
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||||||||||||||||||||||  || |||||| ||||| ||||||||| ||||| |||||| ||  ||||||||||    
T  38868573 agttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 18355860 - 18355937
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||| |||||||||||  | || |||||| ||||||||||||  | |||||||||||| ||||||||||||||||    
T  18355860 agttgaactttaaatttgtgt--aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaattct 18355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33114830 - 33114793
Alignment:
Q  17 aagttgaactataaatttgtgtgtacaattcaattcta 54  Q
    |||||||||||||||||||||||||| | |||||||||    
T  33114830 aagttgaactataaatttgtgtgtacgaatcaattcta 33114793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 44141060 - 44141137
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||||||||||||| || |||||  || |||| ||||||||||||| ||| |||||||| ||| ||  ||||||||||    
T  44141060 agttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 32818380 - 32818460
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctg 98  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||| |||| ||||||| ||  |||||||||||||    
T  32818380 agttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctg 32818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 8604637 - 8604709
Alignment:
Q  23 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||||||||||||||||  || |||||||||||||| ||||||| ||||| |||||| ||  ||||||||||    
T  8604637 aactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 30357582 - 30357508
Alignment:
Q  23 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||||||||||||| || |||||| || |||||||||||| |||||  ||||| ||  ||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 42971912 - 42971966
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 72  Q
    ||||||||||||||||||| |||| || ||||||||| || ||||||||||||||    
T  42971912 agttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaat 42971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 45011941 - 45011893
Alignment:
Q  26 tataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 74  Q
    |||||||||||||||  || |||||||||||||||||||||| ||||||    
T  45011941 tataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 21691223 - 21691301
Alignment:
Q  19 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||||||||||||||||  || ||||||||| || ||||||||| ||||| ||| || ||   |||||||||||    
T  21691223 gttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttgaatcaattct 21691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 35065130 - 35065092
Alignment:
Q  26 tataaatttgtgtgtacaattcaattctagaatcaaaag 64  Q
    |||||||||||||||| || |||||||||||||||||||    
T  35065130 tataaatttgtgtgtaaaaatcaattctagaatcaaaag 35065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 49138773 - 49138835
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    |||||||||||||  |||||| || || |||||| |||||||||||| || ||||||||||||    
T  49138773 agttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagctt 49138835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 4243458 - 4243414
Alignment:
Q  22 gaactataaatttgtgtgtacaattcaattctagaatcaaaagct 66  Q
    |||| ||||||||| ||||| || |||||||||||||||||||||    
T  4243458 gaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 41386825 - 41386906
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 99  Q
    ||||||| |||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||    
T  41386825 agttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctga 41386906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 40491653 - 40491604
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 67  Q
    |||| |||| |||||||||||||| || ||||||||||||||||||||||    
T  40491653 agttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 45997763 - 45997707
Alignment:
Q  18 agttgaactataaatttgtgt-gtacaattcaattctagaatcaaaagctataaatc 73  Q
    ||||||||||||||||||||| ||| || | |||| |||||||||||||||||||||    
T  45997763 agttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatc 45997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31625495 - 31625420
Alignment:
Q  19 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 96  Q
    ||||||||||||||||| ||| | |  |||||| || || |||| |||| |||||||||||||||| |||||||||||    
T  31625495 gttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattc 31625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 18349852 - 18349803
Alignment:
Q  286 tgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagc 335  Q
    ||||||||||||| ||||| ||| | ||||||||||||| ||||||||||    
T  18349852 tgagttgaacaataaatttgagtgtaaaaatcacgtttgaagtcaaaagc 18349803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42816480 - 42816533
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 73  Q
    ||||| |||||||||||||||  || ||||||||||||| ||||| ||||||||    
T  42816480 ttgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 11049323 - 11049246
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||||| |||||    
T  11049323 ttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattct 11049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7524188 - 7524130
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 76  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||    
T  7524188 agttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatccta 7524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 30557577 - 30557517
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    |||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||||    
T  30557577 agttgaactataaatttgtgtgaaaa--tcaattctagaatcaaaaactacaaatcctagctt 30557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1514418 - 1514356
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 80  Q
    |||||||| ||||||||||||||| || |||||| || ||| |||||||| ||||||||||||    
T  1514418 agttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagctt 1514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 7790652 - 7790731
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||| ||||||||||||||| || |||||| ||||||| ||| ||| ||||| || ||| ||  ||||||||||||    
T  7790652 agttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 28287346 - 28287425
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||| ||||||||| ||||  || ||||||||| |||||||||||| ||||||| |||| ||  |||| |||||||    
T  28287346 agttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattct 28287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 40662990 - 40663054
Alignment:
Q  17 aagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 83  Q
    |||||||| |||||||||||||||  |  |||||||| ||||||||||||| |||| ||||||||||    
T  40662990 aagttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaa 40663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 28083909 - 28083975
Alignment:
Q  29 aaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||||||||||| || | |||| ||||||||||||||| |||| ||||||| ||  ||||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 2099659 - 2099728
Alignment:
Q  249 aaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatgaaaatca 318  Q
    ||||||| ||||||||| |||||||||| |||| ||||||||||| | || |||||  || |||||||||    
T  2099659 aaaagtgatttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatca 2099728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 3416155 - 3416090
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 83  Q
    |||| ||||||||||||||||||| || ||||||||| ||| |||| ||| ||||| || ||||||    
T  3416155 agttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaa 3416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 51500862 - 51500903
Alignment:
Q  36 tgtgtacaattcaattctagaatcaaaagctataaatcctag 77  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctag 51500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 17284173 - 17284125
Alignment:
Q  16 caagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 64  Q
    |||||||||| ||||||||| ||||| || |||||| ||||||||||||    
T  17284173 caagttgaacaataaatttgagtgtaaaaatcaattttagaatcaaaag 17284125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 6951317 - 6951392
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||| ||||||||| ||||||||| |||||| ||||||||||||||| |||||||| ||| ||  ||||||||||    
T  6951317 ttgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 9818810 - 9818732
Alignment:
Q  18 agttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    ||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  9818810 agttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 22572414 - 22572493
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||| |||||||||||||| | || |||||||||||| |||||||||||| |||||| ||||| ||  | ||||||||||    
T  22572414 agttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 370743 - 370797
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 72  Q
    ||||||| ||||||||||||||||||| |||||| || |||||||||||| ||||    
T  370743 agttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 18851092 - 18851169
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||| |||||||||| |||||||  || ||||||||| |||||||||||| ||||| |||||| ||  ||||||||||    
T  18851092 agtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 38845518 - 38845441
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||| ||||||| ||||||||||  || |||||||||||||||||| ||| ||||| |||||| ||  ||||||||||    
T  38845518 agtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 42858183 - 42858104
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    |||||||||||||||||||||||  || |||||| |||||| |||||||  |||||||| ||| ||  | ||||||||||    
T  42858183 agttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattct 42858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 18637357 - 18637310
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 67  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  18637357 agttgaactataaat--gtgtgtaaaaatcaattctagaatcaaaagcta 18637310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 22226250 - 22226322
Alignment:
Q  22 gaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaat 94  Q
    ||||| |||||||||||||| || | ||||||| |||||||||||| |||| ||| ||| ||  |||||||||    
T  22226250 gaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 28110448 - 28110504
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 74  Q
    |||| ||||||||||||||||||  || ||||||||| ||||||||| || ||||||    
T  28110448 agttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcc 28110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 42741042 - 42740975
Alignment:
Q  28 taaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 95  Q
    |||||||| ||||| || |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  42741042 taaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 32827594 - 32827542
Alignment:
Q  283 aaatgagttgaacaatgaattttagtatgaaaatcacgtttggagtcaaaagc 335  Q
    ||||||||||||||||  |||| | ||||||||||||||||||| ||||||||    
T  32827594 aaatgagttgaacaatatatttgattatgaaaatcacgtttggaatcaaaagc 32827542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 33019166 - 33019245
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||||||||||| |||||  || ||||||||| || ||||||||| |||| ||||||| ||  | ||||||||||    
T  33019166 agttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattct 33019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 11759871 - 11759913
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaa 62  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  11759871 ttgaactataaatttgtatgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 33502312 - 33502266
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 64  Q
    ||||||||||||||| |||||||| || |||||| ||||||||||||    
T  33502312 agttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaag 33502266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 42982610 - 42982544
Alignment:
Q  27 ataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 93  Q
    ||||||||||||||| || |||||||| ||||||||||||| || | ||||||| ||  ||||||||    
T  42982610 ataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 32523350 - 32523408
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 76  Q
    |||| |||| |||||||||||||| || |||||| ||||||||||||||| ||||||||    
T  32523350 agttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatccta 32523408  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 52364126 - 52364047
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 97  Q
    ||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||||| |||||| ||  |||| |||||||    
T  52364126 agttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 31708249 - 31708303
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 72  Q
    ||||||| |||||||||||||||   | |||||||||||||||||||||| ||||    
T  31708249 agttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaat 31708303  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 50550644 - 50550594
Alignment:
Q  23 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 73  Q
    ||||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  50550644 aactataaatttgtgtgtgaaaatcaattttagaatcaaaagttataaatc 50550594  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 4526206 - 4526161
Alignment:
Q  19 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 64  Q
    ||||||||||||||||||||||| || |||||| || |||||||||    
T  4526206 gttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaag 4526161  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 40147888 - 40147941
Alignment:
Q  46 tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 99  Q
    |||||||||||||||||||||  |||| ||||||| ||  ||||||||||||||    
T  40147888 tcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattctga 40147941  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 31492839 - 31492788
Alignment:
Q  20 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 72  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  31492839 ttgaattataaatttgtgtgttaaat-caattctagaatcaaaagctacaaat 31492788  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 46853544 - 46853592
Alignment:
Q  18 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 66  Q
    |||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  46853544 agttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

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