View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4489_low_8 (Length: 266)

Name: NF4489_low_8
Description: NF4489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4489_low_8
NF4489_low_8
[»] chr2 (2 HSPs)
chr2 (11-109)||(44650970-44651068)
chr2 (176-252)||(44651137-44651213)
[»] chr4 (1 HSPs)
chr4 (12-64)||(14523649-14523701)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 44650970 - 44651068
Alignment:
Q  11 cagagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaatccagatccgtaatagtgtcattactaatccttttgtcagcgaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  44650970 cagagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaatccagatcagtaatagtgtcattactaatccttttgtcagcaaaag 44651068  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 44651137 - 44651213
Alignment:
Q  176 actgcatagaactttcaatcttagtgaggaataattaacagagacaataaaataaatggaaaatgagataataattg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44651137 actgcatagaactttcaatcttagtgaggaataattaacagagaccataaaataaatggaaaatgagataataattg 44651213  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 14523649 - 14523701
Alignment:
Q  12 agagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaat 64  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  14523649 agagattgtacggctaagatctgttaaagcatcctgctgtaagagcgttgaat 14523701  T

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