View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4490-Insertion-10 (Length: 142)

Name: NF4490-Insertion-10
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4490-Insertion-10
NF4490-Insertion-10
[»] chr5 (3 HSPs)
chr5 (8-85)||(1206810-1206889)
chr5 (88-135)||(13358439-13358486)
chr5 (94-142)||(30249354-30249402)
[»] scaffold0301 (1 HSPs)
scaffold0301 (86-139)||(8949-9002)
[»] chr7 (6 HSPs)
chr7 (86-139)||(44413293-44413346)
chr7 (85-139)||(18157308-18157362)
chr7 (85-139)||(43005649-43005703)
chr7 (86-137)||(23443600-23443651)
chr7 (86-137)||(46462078-46462129)
chr7 (86-125)||(15820471-15820510)
[»] chr6 (4 HSPs)
chr6 (86-139)||(18909125-18909178)
chr6 (84-139)||(22232588-22232643)
chr6 (86-139)||(3917579-3917632)
chr6 (86-131)||(14779974-14780019)
[»] chr3 (4 HSPs)
chr3 (85-142)||(35491055-35491112)
chr3 (96-135)||(37468058-37468097)
chr3 (86-138)||(17218107-17218159)
chr3 (86-126)||(44363482-44363522)
[»] chr4 (1 HSPs)
chr4 (85-139)||(8657547-8657601)
[»] chr2 (5 HSPs)
chr2 (86-139)||(24690113-24690166)
chr2 (86-139)||(24699464-24699517)
chr2 (85-139)||(18973140-18973194)
chr2 (85-135)||(40387037-40387087)
chr2 (86-126)||(17333892-17333932)
[»] chr1 (3 HSPs)
chr1 (86-139)||(51967950-51968003)
chr1 (86-139)||(15473859-15473912)
chr1 (85-129)||(44910963-44911007)
[»] scaffold1699 (1 HSPs)
scaffold1699 (86-139)||(1377-1430)
[»] scaffold0119 (1 HSPs)
scaffold0119 (86-142)||(40180-40236)
[»] scaffold0043 (1 HSPs)
scaffold0043 (88-139)||(33222-33273)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 4e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 1206810 - 1206889
Alignment:
Q  8 ctttatgtgctaacaacact--gagagaaaggtagagatgagaagttgttactttgctgagaaaaatagggtttgctggc 85  Q
    |||||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1206810 ctttatgtgctaacaatatttggagagaaaggtagagatgagaagttgttactctgctgagaaaaatagggtttgctggc 1206889  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 13358439 - 13358486
Alignment:
Q  88 tcatatcccaatttttgacttaagaacctacattcatacaccctctga 135  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13358439 tcatatcccaatttttgacctaagaccctacattcatacaccctctga 13358486  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 30249354 - 30249402
Alignment:
Q  94 cccaatttttgacttaagaacctacattcatacaccctctgacccagaa 142  Q
    ||||||||||||| || ||||||||||||||||||| |||||| |||||    
T  30249354 cccaatttttgacctaggaacctacattcatacaccgtctgactcagaa 30249402  T

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Target: scaffold0301 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 8949 - 9002
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8949 tgtcatatcctaatttttgacttaagaacctacattcatacaccctctgaccca 9002  T

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Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 44413346 - 44413293
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  44413346 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgaccca 44413293  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 18157362 - 18157308
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  18157362 ctgtcataccccagtttttgacctaagaacctacattcatacaccctctgaccca 18157308  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 43005703 - 43005649
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  43005703 ctgtcataccccaattttttacctaagaacctacattcatacaccctctgaccca 43005649  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 23443600 - 23443651
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacc 137  Q
    ||||||| ||||||||||||| ||||| ||||||||||||| |||| |||||    
T  23443600 tgtcataccccaatttttgacctaagaccctacattcatacgccctttgacc 23443651  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 46462129 - 46462078
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacc 137  Q
    ||||||| |||||||||| || |||||||||| ||||||||||||| |||||    
T  46462129 tgtcataccccaattttttacctaagaacctagattcatacaccctttgacc 46462078  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 15820471 - 15820510
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcata 125  Q
    ||||||| ||||||||||||| ||||| ||||||||||||    
T  15820471 tgtcataccccaatttttgacctaagaccctacattcata 15820510  T

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Target: chr6 (Bit Score: 46; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 18909125 - 18909178
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18909125 tgtcataccccaatttttgacctaagaacctacattcatacaccctctgaccca 18909178  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 22232643 - 22232588
Alignment:
Q  84 gctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  22232643 gctgtcataccccaatttttaacctaagaacctacattcatacaccctctgaccca 22232588  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 3917632 - 3917579
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||| |||||    
T  3917632 tgtcataccccaatttttaacctaagaacctacattcatacaccctctaaccca 3917579  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 14780019 - 14779974
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccct 131  Q
    |||||||  |||||||||||| |||| |||||||||||||||||||    
T  14780019 tgtcatacaccaatttttgacctaaggacctacattcatacaccct 14779974  T

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Target: chr3 (Bit Score: 46; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 35491055 - 35491112
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaa 142  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  35491055 ctgtcataccccaatttttgacctaagaacctacattcatacaccctctgacctagaa 35491112  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 37468058 - 37468097
Alignment:
Q  96 caatttttgacttaagaacctacattcatacaccctctga 135  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  37468058 caatttttgacttaagaacttatattcatacaccctctga 37468097  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 17218159 - 17218107
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccc 138  Q
    ||||||| ||||||||||||| ||| | ||||||||||||| || ||||||||    
T  17218159 tgtcataccccaatttttgacctaacaccctacattcatacgccgtctgaccc 17218107  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 44363522 - 44363482
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatac 126  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  44363522 tgtcataccctaatttttgacttaagatcctacattcatac 44363482  T

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Target: chr4 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 8657547 - 8657601
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  8657547 ctgtcataccccaatttttgacctaagaacctacattcatacaccctttgaccca 8657601  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 24690113 - 24690166
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  24690113 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaaccca 24690166  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 24699464 - 24699517
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  24699464 tgtcataccccaatttttgacctaagaacctacattcatacaccctctaaccca 24699517  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 18973194 - 18973140
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    |||||||| |||||||||||||  ||||| ||||||||||||||| |||||||||    
T  18973194 ctgtcataccccaatttttgaccaaagaatctacattcatacaccatctgaccca 18973140  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 40387087 - 40387037
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacaccctctga 135  Q
    |||||||| |||||||||| || ||||| |||||||| |||||||||||||    
T  40387087 ctgtcataccccaattttttacctaagaccctacatttatacaccctctga 40387037  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 17333932 - 17333892
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatac 126  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  17333932 tgtcataccccaatttttgacctaagaccctacattcatac 17333892  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 51967950 - 51968003
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  51967950 tgtcataccccaattttttacctaagaacctacattcatacaccctctgaccca 51968003  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 15473912 - 15473859
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  15473912 tgtcataccccaatttttgacctaagagcatacattcatacaccctctgaccca 15473859  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 44911007 - 44910963
Alignment:
Q  85 ctgtcatatcccaatttttgacttaagaacctacattcatacacc 129  Q
    ||||||||| ||||||||| || |||||||| |||||||||||||    
T  44911007 ctgtcatattccaattttttacctaagaacccacattcatacacc 44910963  T

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Target: scaffold1699 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 1430 - 1377
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||| |||||    
T  1430 tgtcataccccaattttttacctaagaacctacattcatacaccctctaaccca 1377  T

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Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 40236 - 40180
Alignment:
Q  86 tgtcatatcccaatttttgacttaagaacctacattcatacaccctctgacccagaa 142  Q
    |||||||  |||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  40236 tgtcatactccaatttttgacctaagaacctacattcatacaccctttgatccagaa 40180  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 33273 - 33222
Alignment:
Q  88 tcatatcccaatttttgacttaagaacctacattcatacaccctctgaccca 139  Q
    ||||| ||||| || |||| ||||||||||||||||||||||||||||||||    
T  33273 tcataccccaacttatgacctaagaacctacattcatacaccctctgaccca 33222  T

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