View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4490-Insertion-3 (Length: 423)
Name: NF4490-Insertion-3
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4490-Insertion-3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 32603973 - 32604366
Alignment:
| Q |
8 |
gattacacacacatggaaaacatgttacgattacacacacatgggaaaa-gcaacata-----ttattaagacttaaaaaagcaacatagttcattattt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32603973 |
gattacacacacatggaaaacatgttacgattacacacacatgggaaaaagcaacttagttcattattaagacttaaaaaagcaacatagttcattattt |
32604072 |
T |
|
| Q |
102 |
gaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcctaagattatacagtacttgtttttctgagttcttt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
32604073 |
gaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcccaagatta-----tacttgtttttctgagttcttt |
32604167 |
T |
|
| Q |
202 |
catatc-aagttattccataacaatgatttaaccatttttacaacatggatgtttgaaccaaatatgagtaagttat--ctacatggtttgtttgccact |
298 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||| |
|
|
| T |
32604168 |
catatcaaagttattccataacaatgatttaaccatttttacaacatggatgtttgaaccaaatatgagtaaggtattccaacatgg-atgtttgccact |
32604266 |
T |
|
| Q |
299 |
ctaattcacattaaactcattctatataaccaaattatcaaacttttcaaccacaaaaccattagaataaaactaatccagtctcaa--agaatcagagt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
32604267 |
ctaattcacattaaactcattctatataaccaaattatcaaacttttcaaccacaaaaccattagaataaaactaatccaatctcaaacagaatcagagt |
32604366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 32603870 - 32603901
Alignment:
| Q |
129 |
aaaaagagtcttataaatgtagtacgataatg |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32603870 |
aaaaagagtcttataaatgtagtacgataatg |
32603901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 11811459 - 11811504
Alignment:
| Q |
238 |
tttacaacatggatgtttgaaccaaatatgagtaagttatctacat |
283 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||| |||||||| |
|
|
| T |
11811459 |
tttacaacatggatctttgaaccaaatgtgagcaagtcatctacat |
11811504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University