View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4490-Insertion-5 (Length: 394)
Name: NF4490-Insertion-5
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4490-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Complemental strand, 46982701 - 46982314
Alignment:
| Q |
7 |
agcctaagccactgaaccagtggctaatacaacaaacagacagatgactcacattgaatacacttaaagaatattgaagaaataaagcaaaagaacaaaa |
106 |
Q |
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| T |
46982701 |
agcctaagccactgaaccagtggctaatacaacaaacagacagatgactcacattgaatacacttaaagaatatggaagaaataaagcaaaagaacaaaa |
46982602 |
T |
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| Q |
107 |
gatacaaagtactaaccatttgaactttgtcaccatgtatagcaatagctggaaagttaattctgcacaaccagttttctaaagcatcggctcctttctt |
206 |
Q |
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| T |
46982601 |
gatacaaagtactaaccatttgaactttgtcaccatgtatagcaatagctggaaagttaattctgcacaaccagttttctaaagcatcggctcctttctt |
46982502 |
T |
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| Q |
207 |
tgtttcaacaaatacaagagttagggcaagctgcattgcattgaaaaacaaattatcaaacacataataattcaaaaacagctggtatagtagctacaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46982501 |
tgtttcaacaaatacaagagttagggcaagctgcattgcattaaaaaacaaattatcaaacacataataattcaaaaacagctggtatagtagctacaat |
46982402 |
T |
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| Q |
307 |
aattatagttatacacatcaacaatctaaaaaatgagcttttaccttcccattgactacattacgtcggagaagatccacaagacgag |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46982401 |
aattatagttatacacatcaacaatctaaaaaatgagcttttaccttcccattgactacattacgtcggagaagatccacaagacgag |
46982314 |
T |
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