View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4490-Insertion-8 (Length: 238)
Name: NF4490-Insertion-8
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4490-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 24203228 - 24203450
Alignment:
| Q |
8 |
attttctccatcctgtaagatctcatgagatccatgtgagggatattatcaacttgaagaagttatttgagtatgcagtcatcaccttgcaagccagttt |
107 |
Q |
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| T |
24203228 |
attttctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaagccagttt |
24203327 |
T |
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| Q |
108 |
gtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactttgtcc |
207 |
Q |
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| T |
24203328 |
gtaagggctgagttagacccaacctaaattctaagtattcc-------actggaatatcttttgttgacttaaaccagtttgaatttaatgac-ttgtcc |
24203419 |
T |
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| Q |
208 |
ttgaagtattcttcaagagtttataggttgg |
238 |
Q |
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| T |
24203420 |
ttgaagtattctgcaagagtttataggttgg |
24203450 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 29409987 - 29409890
Alignment:
| Q |
105 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
202 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgactt |
29409890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
144 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
202 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
144 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
202 |
Q |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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