View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4490_high_2 (Length: 369)

Name: NF4490_high_2
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4490_high_2
NF4490_high_2
[»] chr2 (6 HSPs)
chr2 (19-362)||(17895640-17895983)
chr2 (57-164)||(17846990-17847097)
chr2 (57-172)||(17887256-17887371)
chr2 (57-172)||(17819332-17819447)
chr2 (57-120)||(17859778-17859841)
chr2 (202-273)||(43585945-43586016)
[»] chr6 (2 HSPs)
chr6 (202-292)||(785384-785474)
chr6 (208-268)||(1334714-1334774)
[»] chr5 (2 HSPs)
chr5 (201-260)||(7621169-7621228)
chr5 (203-239)||(9031879-9031915)
[»] chr4 (2 HSPs)
chr4 (202-292)||(37496744-37496834)
chr4 (205-273)||(13307925-13307993)
[»] chr8 (1 HSPs)
chr8 (201-238)||(10497744-10497781)
[»] chr7 (1 HSPs)
chr7 (200-273)||(25956493-25956565)
[»] chr1 (1 HSPs)
chr1 (205-269)||(16925683-16925747)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 17895640 - 17895983
Alignment:
Q  19 cttcctcacattgaagaaacttgctctacccatagctgtggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895640 cttcctcacattgaagaaacttgctctacccatagctgtggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaa 17895739  T
Q  119 agcactgggatgaacaatctgctcgtggatttgtgacacaagtttccaaggcaagaatggggtctgtctcgacaacttgaaggctctgttgcacgaacac 218  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| | ||||    
T  17895740 agcactgggatgaacaatctgcttgtcgatttgtgacacaagtttccaaggcaagcttggggtctgtctcgacaacttgaaggctctgttgcatggacac 17895839  T
Q  219 ttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgattgaatcatctcattttcttaaaatttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17895840 ttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgattgaatcatctcattttctcaaaatttt 17895939  T
Q  319 atccgtacgaacgtatcagtgtcgtgttcagtgtctgtgctcct 362  Q
    ||| |||     ||||||||||||||||||||||||||| ||||    
T  17895940 atcggtataggtgtatcagtgtcgtgttcagtgtctgtgatcct 17895983  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 17846990 - 17847097
Alignment:
Q  57 tggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaaagcactgggatgaacaatctgctcgtggatttgtgaca 156  Q
    ||||||| ||||||||||||||||||| |||||| ||| || | |||||||||||||| ||||| | |  | | ||| ||||| || | |||||||||||    
T  17846990 tggaggaattatgctttgggatagatttcatgatgttggaaatgattacagcaatcagataaaggagtatgttaaacgatctgttcttcgatttgtgaca 17847089  T
Q  157 caagtttc 164  Q
    ||||||||    
T  17847090 caagtttc 17847097  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 17887256 - 17887371
Alignment:
Q  57 tggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaaagcactgggatgaacaatctgctcgtggatttgtgaca 156  Q
    ||||||| ||||||||||||||||||| |||||| ||| || | |||||||||||||| ||||| | |  | | ||| ||||  || | |||||||||||    
T  17887256 tggaggaattatgctttgggatagatttcatgatgttggaaatgattacagcaatcagataaaggagtacgttaaacgatctattcttcgatttgtgaca 17887355  T
Q  157 caagtttccaaggcaa 172  Q
    ||||||||| ||||||    
T  17887356 caagtttccgaggcaa 17887371  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 17819447 - 17819332
Alignment:
Q  57 tggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaaagcactgggatgaacaatctgctcgtggatttgtgaca 156  Q
    ||||||| || ||||||||||||||   ||||||||||||| | |||||||||||||| ||||| | |  | | ||| ||||| || | |||||||||||    
T  17819447 tggaggagttgtgctttgggatagagctcatgatattgaaaatgattacagcaatcagataaaggagtatgttaaacgatctgttcttcgatttgtgaca 17819348  T
Q  157 caagtttccaaggcaa 172  Q
     |||||||| ||||||    
T  17819347 aaagtttccgaggcaa 17819332  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 17859841 - 17859778
Alignment:
Q  57 tggaggatttatgctttgggatagattccatgatattgaaagtaattacagcaatcaggtaaag 120  Q
    ||||||| ||||||||||||||||||| |||||| ||| || | |||||||||||||| |||||    
T  17859841 tggaggagttatgctttgggatagatttcatgatgttggaaatgattacagcaatcagataaag 17859778  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 43585945 - 43586016
Alignment:
Q  202 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 273  Q
    ||||||||||||||||||| |||||||||| ||||||   | || |||||||||||||| ||||||| ||||    
T  43585945 ctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacac 43586016  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 785384 - 785474
Alignment:
Q  202 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgatt 292  Q
    |||||||||||| |||||| |||||||||| |||||||  | ||||||||  ||| ||||||||||| |||| ||| || |||||||||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgacaccgacacgacaccgacacttgtgatt 785474  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 1334774 - 1334714
Alignment:
Q  208 tgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacacc 268  Q
    |||||| |||||| |||||||||| |||||||  | | ||||||| |||||||||||||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacacc 1334714  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 7621169 - 7621228
Alignment:
Q  201 gctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgt 260  Q
    ||||||||||||| |||||| ||||||||| |||||||| || ||||| | |||||||||    
T  7621169 gctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgt 7621228  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 9031879 - 9031915
Alignment:
Q  203 tctgttgcacgaacacttttgattgaaggcgtgtcct 239  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcct 9031915  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 37496834 - 37496744
Alignment:
Q  202 ctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacaccacatcggcacttgtgatt 292  Q
    |||||||||||| |||||| |||||||||||||||||   | ||||||| || |||||| || || | |||| ||| || |||||||||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgatt 37496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 13307993 - 13307925
Alignment:
Q  205 tgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 273  Q
    |||||||| ||||||| ||||||||||| |||| |  | || ||||||| |||||| ||||||||||||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacac 13307925  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 10497744 - 10497781
Alignment:
Q  201 gctctgttgcacgaacacttttgattgaaggcgtgtcc 238  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10497744 gctctgttgcacgaacacctctgattgaaggcgtgtcc 10497781  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 25956565 - 25956493
Alignment:
Q  200 ggctctgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacaccaacac 273  Q
    |||||| ||||||| |||||| |||||||||||||||||   | ||||||| ||||||||| ||||||| ||||    
T  25956565 ggctctattgcacggacacttctgattgaaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacac 25956493  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 16925747 - 16925683
Alignment:
Q  205 tgttgcacgaacacttttgattgaaggcgtgtcctaatatccgacacgtatcgtgttcgacacca 269  Q
    ||||||| | |||||||| |||||||| |||| ||  | ||||||||||||||||| ||||||||    
T  16925747 tgttgcatggacacttttaattgaaggagtgttctggtgtccgacacgtatcgtgtgcgacacca 16925683  T

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