View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4490_low_1 (Length: 587)

Name: NF4490_low_1
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4490_low_1
NF4490_low_1
[»] chr4 (7 HSPs)
chr4 (10-411)||(12141489-12141875)
chr4 (465-571)||(12141929-12142035)
chr4 (297-367)||(45036764-45036834)
chr4 (296-369)||(4341976-4342050)
chr4 (290-369)||(43698764-43698841)
chr4 (295-369)||(55264888-55264962)
chr4 (301-369)||(2113416-2113484)
[»] chr1 (5 HSPs)
chr1 (296-369)||(23802600-23802673)
chr1 (298-368)||(5346039-5346109)
chr1 (296-346)||(4524603-4524653)
chr1 (307-369)||(3889965-3890029)
chr1 (301-369)||(6886583-6886651)
[»] chr8 (3 HSPs)
chr8 (62-215)||(9036483-9036636)
chr8 (301-369)||(38753439-38753507)
chr8 (295-371)||(34678415-34678491)
[»] chr2 (7 HSPs)
chr2 (298-369)||(1001375-1001446)
chr2 (298-369)||(16389466-16389537)
chr2 (310-368)||(14433831-14433889)
chr2 (302-355)||(8686901-8686954)
chr2 (301-365)||(8083816-8083880)
chr2 (307-366)||(11814069-11814128)
chr2 (298-346)||(32484062-32484110)
[»] chr3 (4 HSPs)
chr3 (310-371)||(26609795-26609856)
chr3 (295-369)||(47190181-47190255)
chr3 (58-215)||(42251532-42251689)
chr3 (306-360)||(8167458-8167512)
[»] chr7 (4 HSPs)
chr7 (301-368)||(786218-786285)
chr7 (296-369)||(40773411-40773484)
chr7 (301-369)||(31311971-31312038)
chr7 (324-371)||(39760249-39760296)
[»] chr5 (5 HSPs)
chr5 (314-369)||(7471454-7471509)
chr5 (296-369)||(21144682-21144755)
chr5 (295-368)||(27633669-27633740)
chr5 (303-355)||(15925888-15925940)
chr5 (53-220)||(26613474-26613641)
[»] chr6 (2 HSPs)
chr6 (296-366)||(22719342-22719412)
chr6 (303-364)||(22712209-22712270)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 12141489 - 12141875
Alignment:
Q  10 catcatcaaggaaactcaacatgactccaattaatttggcaggacaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12141489 catcatcaaggaaactcaacatgactccaattaatttggcaggacaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaac 12141588  T
Q  110 tcaaaaagagactatgaagaagtattttgagcaatttggtgagatcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatgga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12141589 tcaaaaagagactatgaagaagtattttgagcaatttggtgagatcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatgga 12141688  T
Q  210 tttgtatgtctatcttcttctctctatatttgaatttctttatcattatcatggttttattctatatattagaaggattgatctatggtgccgggtctcg 309  Q
    ||||||||||||   |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||     
T  12141689 tttgtatgtcta---tcttctctctatattttaatttctttatcattatcatgttttaattctatatattagaaggattgatctttggtgccgggtctca 12141785  T
Q  310 aaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacagacttatcagaaggattgatctaaatgatcaagtttatgta 409  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||            ||||||||||||||||||||||||||||||    
T  12141786 aaccgagtttctcgaggttgaagagagatactctcaaccaagtaacttctcgggagac------------aggattgatctaaatgatcaagtttatgta 12141873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 465 - 571
Target Start/End: Original strand, 12141929 - 12142035
Alignment:
Q  465 ctcaatgaatcgtggtagcaaaacaactcaaacacttgcaatacacatgtatatttaagtcatttgcaaagaaatgaagcatatagtaatccaagtttag 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12141929 ctcaatgaatcgtggtagcaaaacaactcaaacacttgcaatacacatgtatatttaagtcatttgcaaagaaatgaagcatatagtaatccaagtttag 12142028  T
Q  565 tttcttt 571  Q
    |||||||    
T  12142029 tttcttt 12142035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 45036764 - 45036834
Alignment:
Q  297 gtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagac 367  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||| || ||||| |||||||||||    
T  45036764 gtgccaggtctcgaaccgagtttcacaaggttgaagagagaaactctcaaccatgtgacttctcgggagac 45036834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 4341976 - 4342050
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagt-gacctctcgggagacag 369  Q
    |||||||||||| |||||||||||||| ||||||||||||| | ||||||| || || ||| |||||||||||||    
T  4341976 ggtgccgggtcttgaaccgagtttctcgaggttgaagagagtttctctcaaccacgtggacttctcgggagacag 4342050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 43698841 - 43698764
Alignment:
Q  290 atctatggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||| ||||||||||||| ||||| |||||||  |||||||||||||  | |||||| |||||||| |||||||||||||    
T  43698841 atctctggtgccgggtcttgaaccaagtttcttgaggttgaagagag--aatctcaaccaagtgacttctcgggagacag 43698764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 55264962 - 55264888
Alignment:
Q  295 tggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||| || ||||||||||||||| ||  ||||||||||||| | ||||||| ||| |||| |||||||| ||||    
T  55264962 tggtgtcgagtctcgaaccgagttccttgaggttgaagagagtttctctcaaccaaatgacttctcgggatacag 55264888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 2113416 - 2113484
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||||||| |||||| ||| ||||| ||||||| ||| |||||| | ||| |||| |||||||||||||    
T  2113416 cgggtctcaaaccgactttttcaagattgaagatagaaactctctaccaaatgacttctcgggagacag 2113484  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 23802600 - 23802673
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||    
T  23802600 ggtgccgggtctcgaaccgagtttctcgaggttgaagagagaaactctcaaccaagtgacttctcgggagacag 23802673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 5346039 - 5346109
Alignment:
Q  298 tgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagaca 368  Q
    |||||| |||||||||||||| ||||| |||||||||||| |||||||| |||||||| ||||||||||||    
T  5346039 tgccggttctcgaaccgagttcctcaaagttgaagagagaaactctcaaccaagtgacttctcgggagaca 5346109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 4524653 - 4524603
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaa 346  Q
    |||| ||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  4524653 ggtgtcgggtttcgaaccgagtttcttaaggttgaagagagaaactctcaa 4524603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 3889965 - 3890029
Alignment:
Q  307 tcgaaccgagtttctcaaggttgaagagagata--ctctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||||||||||||||||||||||| | |  ||||||| ||||| || |||||||||||||    
T  3889965 tcgaaccgagtttctcaaggttgaagagataaactctctcaaccaagttacttctcgggagacag 3890029  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 6886651 - 6886583
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||| || ||||||||||||| |||||||||||||| ||| |||| |||||||   ||||||||||||    
T  6886651 cgggtttcaaaccgagtttctcgaggttgaagagagaaactttcaaccaagtgatacctcgggagacag 6886583  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 9036483 - 9036636
Alignment:
Q  62 tgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgagatcttggaa 161  Q
    ||||||||| |  |||||| | ||||||||||| || ||||||||||||||||  || || ||||  | ||||||||| |||||||| |||||||| |||    
T  9036483 tgacacaacatttaccaaattatttgttggagggttagcttgggaaactcaaagggaaacaatgagaatgtattttgaacaatttggagagatcttagaa 9036582  T
Q  162 gctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgta 215  Q
    ||||||||||||||||| ||    ||||||||||| ||||| ||||| ||||||    
T  9036583 gctgttgttatcactgataagtatactggaagatctaaaggttatggttttgta 9036636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 38753439 - 38753507
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||| | ||||| ||||||||    
T  38753439 cgggtctctaaccgagtatctcaaggttgaagagagatactctcaaccaagtaatctctcaggagacag 38753507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 34678415 - 34678491
Alignment:
Q  295 tggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacagac 371  Q
    ||||| |||||||| |||| |||| ||||| |||||||||||| ||||||||  ||||||  | |||||||||||||    
T  34678415 tggtgtcgggtctccaaccaagttcctcaaagttgaagagagaaactctcaactaagtgatttttcgggagacagac 34678491  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 1001446 - 1001375
Alignment:
Q  298 tgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||| |||| ||||||    
T  1001446 tgccgggtctcgaaccgagtttctcgaggttgaagagagaaattctcaaccaagtgacctttcggaagacag 1001375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 16389537 - 16389466
Alignment:
Q  298 tgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||||| |||||||||||||  ||||||||||||| ||| |||| |||||||| |||||||||||||    
T  16389537 tgccgggtctcaaaccgagtttctcggggttgaagagagaaactatcaaccaagtgacttctcgggagacag 16389466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 14433889 - 14433831
Alignment:
Q  310 aaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagaca 368  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| |||| |||||||    
T  14433889 aaccgagtttctcgaggttgaagagagaaactctcaaccaagtgacttctcaggagaca 14433831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 8686901 - 8686954
Alignment:
Q  302 gggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgac 355  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||    
T  8686901 gggtctcgaaccgagtttctcgaggatgaagagagaaactctcaaccaagtgac 8686954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 8083816 - 8083880
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggag 365  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||  | ||||| |||||||||    
T  8083816 cgggtctcaaaccgagtttctcaaggttaaagagagaaactctcaactacgtgacttctcgggag 8083880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 11814069 - 11814128
Alignment:
Q  307 tcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggaga 366  Q
    |||||| ||||||||| |||||||||||||| |||||||| ||| |||||||||| ||||    
T  11814069 tcgaactgagtttctcgaggttgaagagagaaactctcaaccaaatgacctctcgtgaga 11814128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 32484062 - 32484110
Alignment:
Q  298 tgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaa 346  Q
    |||| |||||| ||||||||||||| |||||||||||||| ||||||||    
T  32484062 tgccaggtctcaaaccgagtttctcgaggttgaagagagaaactctcaa 32484110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 26609856 - 26609795
Alignment:
Q  310 aaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacagac 371  Q
    |||||||||||||||| ||||||||||| |||||||| | |||||| |||||||||||||||    
T  26609856 aaccgagtttctcaagattgaagagagaaactctcaacctagtgacttctcgggagacagac 26609795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 47190255 - 47190181
Alignment:
Q  295 tggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||||  | |||||||||||||| |||||||||||||| |||||||| ||| |||||||| || ||||||    
T  47190255 tggtgccgggatttgaaccgagtttctcgaggttgaagagagaaactctcaaccaaatgacctcttggaagacag 47190181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 42251532 - 42251689
Alignment:
Q  58 ttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgagatctt 157  Q
    |||||||||||||||| || ||  ||||||||||||| || |||||||| ||  ||| ||| ||  | ||    || ||||| || |||||||| || ||    
T  42251532 ttggtgacacaacttatacgaagatttttgttggagggttagcttgggagaccaaaagagacacactcaaacgttactttgatcagtttggtgatatttt 42251631  T
Q  158 ggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgta 215  Q
     ||||||||||| |||||||||| | ||||||||| ||| ||||| ||||| ||||||    
T  42251632 agaagctgttgtcatcactgacagaaccactggaaaatcaaaaggatatggctttgta 42251689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 8167512 - 8167458
Alignment:
Q  306 ctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctc 360  Q
    ||||||||| || |||| ||||||||||||||  ||||||| |||||||||||||    
T  8167512 ctcgaaccgtgtatctcgaggttgaagagagaatctctcaaccaagtgacctctc 8167458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 786285 - 786218
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagaca 368  Q
    |||||||| ||||||||||||||||||||||||| || |||||||| ||||| ||||||  |||||||    
T  786285 cgggtctcaaaccgagtttctcaaggttgaagagggaaactctcaaacaagtaacctcttaggagaca 786218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 40773411 - 40773484
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||||||||||||||||| |||| ||| |||| |||||||| | ||||||| || ||||| |||||||||||||    
T  40773411 ggtgccgggtctcgaaccaagttcctcgaggtcgaagagagtttctctcaaccacgtgacttctcgggagacag 40773484  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 31312038 - 31311971
Alignment:
Q  301 cgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||||||| |||||||| |||| |||||||||||||| |||||||| || |||| |||||| |||||||    
T  31312038 cgggtctcaaaccgagtctctcgaggttgaagagagaaactctcaaccatgtga-ctctcgagagacag 31311971  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 39760249 - 39760296
Alignment:
Q  324 aggttgaagagagatactctcaatc-aagtgacctctcgggagacagac 371  Q
    |||||||||||||| |||||||| | |||||||||||||||||||||||    
T  39760249 aggttgaagagaga-actctcaacccaagtgacctctcgggagacagac 39760296  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 7471509 - 7471454
Alignment:
Q  314 gagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    ||||||||| |||||||||| ||| |||||||| |||||||||||| |||||||||    
T  7471509 gagtttctcgaggttgaagaaagaaactctcaaccaagtgacctcttgggagacag 7471454  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 21144755 - 21144682
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagacag 369  Q
    |||| ||||| |||||||||||||||   ||||||||||||| ||||||||  ||||||  |||||||||||||    
T  21144755 ggtgtcgggtatcgaaccgagtttctgtcggttgaagagagaaactctcaacaaagtgatttctcgggagacag 21144682  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 27633669 - 27633740
Alignment:
Q  295 tggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggagaca 368  Q
    |||||||||| ||||||||||||||| | |||||||||||||| ||||||||| |||| |||| || |||||||    
T  27633669 tggtgccgggactcgaaccgagtttc-cgaggttgaagagaga-actctcaattaagtaacctatcaggagaca 27633740  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 15925888 - 15925940
Alignment:
Q  303 ggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgac 355  Q
    |||||||||||||||||||| ||||||||||||| | ||||||| ||| ||||    
T  15925888 ggtctcgaaccgagtttctcgaggttgaagagagtttctctcaaccaaatgac 15925940  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 26613474 - 26613641
Alignment:
Q  53 acaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgag 152  Q
    ||||||||| |||||||| | ||| || ||||||||||||||| | ||||||||||||| ||  ||    ||||  |  |||||||| |||||||||||     
T  26613474 acaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaatttggtgac 26613573  T
Q  153 atcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgtatgtct 220  Q
    ||  | ||||||||  |||||||||| ||   ||| |||| ||| ||||| || ||||||||||||||    
T  26613574 atacttgaagctgtcattatcactgataagaacacaggaaaatctaaaggatacggatttgtatgtct 26613641  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22719412 - 22719342
Alignment:
Q  296 ggtgccgggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcgggaga 366  Q
    ||||| |||||||||||| | |||||  |||||||| ||||| |||||||| |||||||| ||||||||||    
T  22719412 ggtgctgggtctcgaaccaactttcttcaggttgaaaagagaaactctcaaccaagtgacttctcgggaga 22719342  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 22712209 - 22712270
Alignment:
Q  303 ggtctcgaaccgagtttctcaaggttgaagagagatactctcaatcaagtgacctctcggga 364  Q
    ||||||||||| |||||||| || ||||||||||||||||| || ||| |||| ||||||||    
T  22712209 ggtctcgaaccaagtttctcgagtttgaagagagatactctgaaccaaatgacttctcggga 22712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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