View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4490_low_4 (Length: 357)
Name: NF4490_low_4
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4490_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 10482285 - 10481950
Alignment:
| Q |
12 |
aggttaacccaatgtatttcttatgagatggaatattaaggtatgatgtggaagaacactttattctgtaataaaacttttgcatcaataagcaaataaa |
111 |
Q |
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| T |
10482285 |
aggttaacccaatgtatttcttgtgagatggaatattaaggtatgatgtggaagaacactttattctgtaataaa-cttttgcatcaataagcaaataaa |
10482187 |
T |
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| Q |
112 |
gctcaatatattttggtggaatttctgtggcatgccatattcaaggaaatgggtggatcagagaaagctccagaagaaatttcatggaaaataatcttgc |
211 |
Q |
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| T |
10482186 |
gctcaatatattttggtagaatttctgtggcatgccatattcaaggaaatgggtggatcagagaaagctccagaagaaatttcatggaaaataatcttgc |
10482087 |
T |
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| Q |
212 |
tagctgcttcagtgtagtgaactccatcccaattcactcttgcagatggtctttcacatgaacctacaaaaatttgagtaccattgacctttatggttcc |
311 |
Q |
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| T |
10482086 |
tagctgcttcagtgtagtgaactccatcccaattcactcttgcagatggtctttcacatgaacctacaaaaatttgagtgccattgacctttatggttcc |
10481987 |
T |
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| Q |
312 |
tccacatccaacactactgctataattatactctcct |
348 |
Q |
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| T |
10481986 |
tccacatccaacactactgctgtaattatactctcct |
10481950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 10544957 - 10545072
Alignment:
| Q |
128 |
tggaatttctgtggcatgccatattcaaggaaatgggtggatcagagaaagctccagaagaaatttcatggaaaataatcttgctagctgcttcagtgta |
227 |
Q |
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| T |
10544957 |
tggaagttctatgacatgccatgttcaatggaatgggaggatctgagaaagccccagtagaaatttgatcaaagataaatttgttagctgcttcagtgta |
10545056 |
T |
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| Q |
228 |
gtgaactccatcccaa |
243 |
Q |
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| T |
10545057 |
gtgaattccatcccaa |
10545072 |
T |
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