View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4490_low_8 (Length: 248)
Name: NF4490_low_8
Description: NF4490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4490_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 24202667 - 24202506
Alignment:
| Q |
66 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
165 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| |||||||| | |
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| T |
24202667 |
gtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactcaatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtg |
24202568 |
T |
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| Q |
166 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaa |
227 |
Q |
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|||||||| |||||||||||||||||| | |||||| ||||||||||||| |||||||||| |
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| T |
24202567 |
ctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctttagataaagttgaa |
24202506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 29410931 - 29411090
Alignment:
| Q |
68 |
gagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagagtt |
167 |
Q |
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||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
29410931 |
gagaaagaaaatgaaagggtactttatgcgaataacctttccactcaatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagct |
29411030 |
T |
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| Q |
168 |
gcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaa |
227 |
Q |
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| T |
29411031 |
gcatctttccatcgcttcacctgcgcgtccatcatccccatttctttagataaagctgaa |
29411090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 27561526 - 27561685
Alignment:
| Q |
66 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
165 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | || | ||||||||||||||||| ||||| |||||||| ||||| |
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| T |
27561526 |
gtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccactcaatttcg--ctgaatgaatgtgctttctcacgcaatgctacagctttaagag |
27561623 |
T |
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| Q |
166 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaa |
227 |
Q |
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||||||||| ||||||||||||||| || |||||| ||||||||||||| ||||| |||| |
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| T |
27561624 |
ctgcatctttcgatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaa |
27561685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 36668397 - 36668547
Alignment:
| Q |
66 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
165 |
Q |
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|||||||||||||||||| || | ||||||||||||||||| ||||||||||| |||||| |||||||||||| ||| |||||||||||||||| ||| |
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| T |
36668397 |
gtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaatttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgag |
36668496 |
T |
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| Q |
166 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttag |
216 |
Q |
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||||||||| |||||||||||||||| || |||||| ||||||||||||| |
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| T |
36668497 |
ctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
36668547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 36672910 - 36672831
Alignment:
| Q |
111 |
ctcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagagttgcatcttttcatcgcttcaactg |
190 |
Q |
| |
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|||||||| | ||||||| || |||||||||||||||||||||| ||||||||| | ||||||| |||| ||||||||| |
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| T |
36672910 |
ctcaatttcgctcttagtaaaactgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactg |
36672831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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