View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_high_10 (Length: 340)
Name: NF4491_high_10
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 32676846 - 32676516
Alignment:
| Q |
12 |
aattctcaaactccaggtgtaagaagggaaaccttaatatgttggactgnnnnnnnnnnnnnngtcaactatgtttatatggtaattgagtttgatttaa |
111 |
Q |
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| T |
32676846 |
aattctcaaactccaggtgtaagaagggaaaccttaatatgttggactgttttttttttt---gtcaactatgtttatatggtaattgagtttgatttaa |
32676750 |
T |
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| Q |
112 |
ccattataatcgcctatgtagatttaaaatgtgacatggtatc-----atttattaatgaggaaattcatgtaataactattgcatcttcctctaaaaaa |
206 |
Q |
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| T |
32676749 |
ccattataattgcctacgtagatttaaaatgtgacatggtatggtataatttattaatgaggaaattcatgtaataactattacatcttcctctaaaaaa |
32676650 |
T |
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| Q |
207 |
tccttaatatgtcgggagtatttaatggaaggaaatccatgttaaatttgtgaacatgtaattacggagagatggagaagatcataactctattatcaat |
306 |
Q |
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| T |
32676649 |
accttaatatgtcgggagtatttaatggaaggaaatccatgttaaatttgtgaacatgtaatcacggagagatggagaagatcatagctctattatcaat |
32676550 |
T |
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| Q |
307 |
tgcaaatttgagtatgcatgatatataattatgt |
340 |
Q |
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| T |
32676549 |
tgcaaatttgagtatgcatgatatgtaattatgt |
32676516 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 17610937 - 17610872
Alignment:
| Q |
129 |
gtagatttaaaatgtgacatggtatcatttattaatgaggaaattcatgtaataactattgcatct |
194 |
Q |
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| T |
17610937 |
gtagattgaaaatatgacatggtagagtttattaatgaggaaatccatgtaataactatttcatct |
17610872 |
T |
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