View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4491_high_1_N (Length: 645)

Name: NF4491_high_1_N
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4491_high_1_N
NF4491_high_1_N
[»] chr2 (8 HSPs)
chr2 (101-445)||(21246869-21247214)
chr2 (521-634)||(21246680-21246793)
chr2 (521-634)||(23656679-23656791)
chr2 (47-99)||(21247878-21247930)
chr2 (521-619)||(16858571-16858669)
chr2 (521-619)||(35922508-35922605)
chr2 (521-593)||(32252336-32252407)
chr2 (575-634)||(24724814-24724873)
[»] chr6 (5 HSPs)
chr6 (521-634)||(21038032-21038144)
chr6 (521-634)||(8404084-8404196)
chr6 (521-634)||(21083655-21083767)
chr6 (543-619)||(10907069-10907145)
chr6 (521-619)||(7848266-7848363)
[»] chr4 (6 HSPs)
chr4 (521-634)||(15873193-15873305)
chr4 (524-634)||(12228731-12228838)
chr4 (521-634)||(9564097-9564209)
chr4 (543-619)||(6821278-6821353)
chr4 (557-619)||(11555805-11555867)
chr4 (521-622)||(11936241-11936341)
[»] chr3 (6 HSPs)
chr3 (521-634)||(13927154-13927266)
chr3 (521-634)||(16362891-16363003)
chr3 (521-634)||(21974943-21975055)
chr3 (521-634)||(21997374-21997486)
chr3 (521-632)||(13929031-13929141)
chr3 (588-634)||(22159517-22159563)
[»] scaffold0737 (1 HSPs)
scaffold0737 (521-634)||(3931-4043)
[»] scaffold0385 (1 HSPs)
scaffold0385 (521-634)||(13931-14044)
[»] chr7 (2 HSPs)
chr7 (521-624)||(37946117-37946221)
chr7 (521-634)||(4532018-4532131)
[»] scaffold0054 (1 HSPs)
scaffold0054 (521-634)||(70035-70147)
[»] scaffold0601 (1 HSPs)
scaffold0601 (562-622)||(5195-5255)
[»] chr5 (1 HSPs)
chr5 (521-619)||(13935473-13935570)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 101 - 445
Target Start/End: Complemental strand, 21247214 - 21246869
Alignment:
Q  101 ttaataaaaggaagaaaaacaaaaatattagtatatgttgggttttgaaccgtcacagtatgagcatatgaacactagaagctgaacttaataagaagaa 200  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21247214 ttaataaaaggaagaaaaacaaaaataataggatatgttgggttttaaaccatcacagtatgaccatatgaacactagaagctgaacttaataagaagaa 21247115  T
Q  201 gata-gcacataagcatagtgtgatatgacttattcatgtgtaagttctaaattagtatatatagaaataagctattgaccttttagtgaatattagaat 299  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21247114 gataagcacataagcatagtgtgatacgacttattcatgtgtaagttctaaattagtatatatagaaataagctattgaccttttaatgaatattagaat 21247015  T
Q  300 tcagttattagtataacgatgacaacctttttaagttaaattaataataaggctcttagaatttagttattagttgatctattgaagattaaattcattg 399  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  21247014 tcagttattagtataacgatgaaaatctttttaagttaaattaataataaggctcttagaatttcgttattagttgatctattgaggaataaattcattg 21246915  T
Q  400 acgatgttgatgatttaattaatcatgtgtacggatgtgctattta 445  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  21246914 acgatgttgatgatttaattaatcatgtgtatggatgtgctattta 21246869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 21246793 - 21246680
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21246793 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 21246694  T
Q  621 ttatatgcattcat 634  Q
    ||||||||||||||    
T  21246693 ttatatgcattcat 21246680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 23656679 - 23656791
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    ||||||| |||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||| ||||||    
T  23656679 ttgtgtgtttgcattagagttgtgcattttag-tgggagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtcggatttat 23656777  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  23656778 ttgtatgcattcat 23656791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 21247930 - 21247878
Alignment:
Q  47 caaggtaagggggagaacgttccatcttagggtattattattccaaattgaac 99  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  21247930 caaggtaagggggagaacgtttcatcttaggatattattattccaaattgaac 21247878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 619
Target Start/End: Complemental strand, 16858669 - 16858571
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||||| ||| |||||| || |||||||||||  ||||||||||||||||| ||| ||||| |||||| |||||||  |||| |||||| ||||||||    
T  16858669 ttgtgtgtttgtattagagttgtgcattttagggaggagtcttgcattaatatgtggattatgtgattaagtgtatacatgtaatacttgccgaattta 16858571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 619
Target Start/End: Original strand, 35922508 - 35922605
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    |||||||||||||||||| |  ||||||||||| || ||||||||||| ||| ||| | ||| ||| |||||||||||| ||| |||||||| ||||||    
T  35922508 ttgtgtgcttgcattagagtcgtgcattttaggagg-agtcttgcattcataggtggaatatgtgactatgtgtatatgcgtaatacttgtcaaattta 35922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 593
Target Start/End: Original strand, 32252336 - 32252407
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtg 593  Q
    |||||||||||||  ||| || ||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||    
T  32252336 ttgtgtgcttgcaacagagttgtgcattttagg-gggagtcttgcattaatatgtggattatgtgactatgtg 32252407  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 634
Target Start/End: Original strand, 24724814 - 24724873
Alignment:
Q  575 tgaattatttgattatgtgtatatgtgtattacttgtcgaatttatttatatgcattcat 634  Q
    |||| ||||| | |||||||||| || | |||||||| ||||||||||||||||||||||    
T  24724814 tgaagtatttaaatatgtgtatacgtttgttacttgttgaatttatttatatgcattcat 24724873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 21038032 - 21038144
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  21038032 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtcgaatttat 21038130  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  21038131 ttctatgcattcat 21038144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 8404084 - 8404196
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||| ||||||||||| | || |||||||| || |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  8404084 ttgtgttcttgcattagagtcatacattttag-tgagagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtcgaatttat 8404182  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  8404183 ttctatgcattcat 8404196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 21083655 - 21083767
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| ||  ||||||||||||||| ||||||||||||| ||||||||||  ||| || |||||| |||||||    
T  21083655 ttgtgtgcttgcattagagtcgtgcattttag-tgaaagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttgcttgtcaaatttat 21083753  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  21083754 ttttatgcattcat 21083767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 619
Target Start/End: Original strand, 10907069 - 10907145
Alignment:
Q  543 tgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||||||| | |||||||||||| ||||   ||||||||||||||||||||| || |||| |||||||||||||||    
T  10907069 tgcattttaagggggagtcttgcagtaatttatgaattatttgattatgtgtacatttgtaatacttgtcgaattta 10907145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 619
Target Start/End: Complemental strand, 7848363 - 7848266
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||||||||| |||||| |  ||||||||||| || | ||||||||| ||| ||| | ||| ||| |||||||||||||||| |||||||||||||||    
T  7848363 ttgtgtgcttgtattagagtcgtgcattttaggagg-actcttgcattcataggtggaatatgtgactatgtgtatatgtgtaatacttgtcgaattta 7848266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 15873193 - 15873305
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||| |||||| |||||| ||||||||||  ||| |||||||||||||||||    
T  15873193 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttgcattaatatgtgaatgatttgaatatgtgtatacttgtgttacttgtcgaatttat 15873291  T
Q  621 ttatatgcattcat 634  Q
    ||||||||||||||    
T  15873292 ttatatgcattcat 15873305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 524 - 634
Target Start/End: Complemental strand, 12228838 - 12228731
Alignment:
Q  524 tgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttattta 623  Q
    ||||||||||||||| || ||||||||||    |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||||     
T  12228838 tgtgcttgcattagagttgtgcattttagt---gagtcttgcattaatatgtgaattatttgaatatgtgtatacttgttttacttgtcgaatttatttt 12228742  T
Q  624 tatgcattcat 634  Q
    |||||||||||    
T  12228741 tatgcattcat 12228731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 9564209 - 9564097
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    ||||||| |||||||||| |  ||||| ||||| ||||||||| |||||||| |||||| |||||| |||||| ||| || | |||||||||||||||||    
T  9564209 ttgtgtgtttgcattagagtcgtgcatattagg-gggagtcttacattaatatgtgaatcatttgaatatgtgcatacgtctgttacttgtcgaatttat 9564111  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  9564110 ttttatgcattcat 9564097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 619
Target Start/End: Complemental strand, 6821353 - 6821278
Alignment:
Q  543 tgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||||||||| |||||||||||||| ||| ||| | ||| ||| |||||||||||||||| |||||||||||||||    
T  6821353 tgcattttagg-gggagtcttgcattcataggtggaatatgtgactatgtgtatatgtgtaatacttgtcgaattta 6821278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 619
Target Start/End: Complemental strand, 11555867 - 11555805
Alignment:
Q  557 gagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||| |||||||||| |||  |||| |||||| ||||||| ||||| |||||||||||||||    
T  11555867 gagtcgtgcattaatatgtgggttatgtgattaagtgtatacgtgtaatacttgtcgaattta 11555805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 622
Target Start/End: Complemental strand, 11936341 - 11936241
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  ||||| ||||| ||| ||||| |||||||| ||| ||||| || ||| ||||| ||||||| || ||| | |||||||    
T  11936341 ttgtgtgcttgcattagagtcgtgcatcttagg-gggtgtcttacattaatatgtggattatgtgcttaagtgtacatgtgtaatatttgcccaatttat 11936243  T
Q  621 tt 622  Q
    ||    
T  11936242 tt 11936241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 13927154 - 13927266
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||  ||| | |||||| ||||||||    
T  13927154 ttgtgtgcttgcattagagttgtgcattttag-tgggagtcttgcactaatatgtgaattatttgaatatgtgtatacttgtgtcacttgtagaatttat 13927252  T
Q  621 ttatatgcattcat 634  Q
    ||||||||||||||    
T  13927253 ttatatgcattcat 13927266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 16362891 - 16363003
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||| ||||||||    
T  16362891 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtagaatttat 16362989  T
Q  621 ttatatgcattcat 634  Q
    ||||||||||||||    
T  16362990 ttatatgcattcat 16363003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 21975055 - 21974943
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  21975055 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtcgaatttat 21974957  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  21974956 ttttatgcattcat 21974943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 21997486 - 21997374
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  21997486 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttgcattaatatgtgaattatttgaatatgtgtatacttgtgttacttgtcgaatttat 21997388  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  21997387 ttttatgcattcat 21997374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 632
Target Start/End: Original strand, 13929031 - 13929141
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| || |||||||||  ||||||||||||| ||||| ||||| |||||||  ||||||| |  |||   |||| | ||||||||    
T  13929031 ttgtgtgcttgcattagagttgtgcatttta-atgggagtcttgcactaatatgtgaaatatttgaaaatgtgtacacttgtgccacttttagaatttat 13929129  T
Q  621 ttatatgcattc 632  Q
    ||||||||||||    
T  13929130 ttatatgcattc 13929141  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 634
Target Start/End: Complemental strand, 22159563 - 22159517
Alignment:
Q  588 tatgtgtatatgtgtattacttgtcgaatttatttatatgcattcat 634  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  22159563 tatgtgtatacttgtgttacttgtcgaatttatttttatgcattcat 22159517  T

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Target: scaffold0737 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 3931 - 4043
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  |||||||||| |||||||||| |||||||| ||||||||||||| ||| ||||||  ||| |||||||||||||||||    
T  3931 ttgtgtgcttgcattagagtcgtgcattttag-tgggagtcttacattaatatgtgaattatttgaatatttgtataattgtgttacttgtcgaatttat 4029  T
Q  621 ttatatgcattcat 634  Q
    || |||||||||||    
T  4030 ttctatgcattcat 4043  T

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Target: scaffold0385 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 14044 - 13931
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta- 619  Q
    |||||||||||||||||| |  |||||||||| || ||||||| |||||||| ||||||||||||| ||||||||||  ||| |||||| |||||||||     
T  14044 ttgtgtgcttgcattagagtcgtgcattttag-tgagagtcttccattaatatgtgaattatttgaatatgtgtatacttgtgttacttatcgaatttat 13946  T
Q  620 tttatatgcattcat 634  Q
    ||| |||||||||||    
T  13945 tttttatgcattcat 13931  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 624
Target Start/End: Original strand, 37946117 - 37946221
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagt-gaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    ||||||||||||||| || || || ||||||||  ||||||||||||||||| || || |||| |||||| ||||||| ||| | |||||||||||||||    
T  37946117 ttgtgtgcttgcattcgagttgtgaattttagggaggagtcttgcattaatatgtggatttatgtgattaagtgtatacgtgcagtacttgtcgaattta 37946216  T
Q  620 tttat 624  Q
     ||||    
T  37946217 attat 37946221  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 634
Target Start/End: Original strand, 4532018 - 4532131
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttg-attatgtgtatatgtgtattacttgtcgaattta 619  Q
    |||| ||||||||||||| |  ||| |||||| ||| ||||||| ||||||| ||||||| |||  | ||||||||||  ||| |||||||| |||||||    
T  4532018 ttgtttgcttgcattagagtcgtgcgttttag-tggaagtcttgaattaatatgtgaattttttttaatatgtgtatacttgtgttacttgttgaattta 4532116  T
Q  620 tttatatgcattcat 634  Q
    ||| |||||||||||    
T  4532117 tttctatgcattcat 4532131  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 634
Target Start/End: Complemental strand, 70147 - 70035
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttat 620  Q
    |||||||||||||||||| |  ||||| ||||| || ||  ||| |||||   ||||||||| ||| |||||||||| |||| | |||||||||||||||    
T  70147 ttgtgtgcttgcattagagtcctgcatattaggagg-agatttgtattaacgtgtgaattatctgaatatgtgtataagtgtgtcacttgtcgaatttat 70049  T
Q  621 ttatatgcattcat 634  Q
    || ||||| |||||    
T  70048 ttctatgctttcat 70035  T

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Target: scaffold0601 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 622
Target Start/End: Original strand, 5195 - 5255
Alignment:
Q  562 ttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaatttattt 622  Q
    ||||||||||| ||||||||| ||| |||||||||| |||| |  ||||||||||||||||    
T  5195 ttgcattaatatgtgaattatctgaatatgtgtatacgtgtgtcccttgtcgaatttattt 5255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 619
Target Start/End: Complemental strand, 13935570 - 13935473
Alignment:
Q  521 ttgtgtgcttgcattagaattatgcattttaggtgggagtcttgcattaataagtgaattatttgattatgtgtatatgtgtattacttgtcgaattta 619  Q
    |||||||||||| ||| | || || |||||||| |  ||| ||||||||||| ||| ||||| ||| | ||||||||  ||||||||||||||||||||    
T  13935570 ttgtgtgcttgccttacagttgtggattttagg-gaaagttttgcattaatatgtggattatgtgactttgtgtatacatgtattacttgtcgaattta 13935473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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