View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_high_2 (Length: 456)
Name: NF4491_high_2
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Complemental strand, 46811129 - 46810688
Alignment:
| Q |
8 |
cataattgagttgaagctcggaaatatgattaattaatctaaaattgaaaataggtaaccaattgataatctatctttaattaaattgagtttagtttga |
107 |
Q |
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| T |
46811129 |
cataattgagttgaagctgggaaatatgattaattaatctaaaattggaaataggtaaccaattgataatctatctttaattaaattgagtttagtttga |
46811030 |
T |
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| Q |
108 |
tctttgaaaaagatcagttgagctttcagccgaataaattatacgatgtggcgaaggagacataacaaattggttgtaattgttaatattga-tgttcat |
206 |
Q |
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| T |
46811029 |
tctttgaaaaagatcagttgggctttcagccgaacaaattatacgatgtggcgaaggagacataacaaattggttgtaattgttactattgattgttc-- |
46810932 |
T |
|
| Q |
207 |
atatagcaatgtgttcttaagtggatcatcccctatacagagagagatcggacactaggcactggtacccaacatcttgaaatagtagttggaaatagtt |
306 |
Q |
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| T |
46810931 |
atatagcaatgtgttcttaaatggatcatcccctatacagagagagatcggacactaggtactggtacccaacatcttgaaatagtagttggaaatagtt |
46810832 |
T |
|
| Q |
307 |
tatgaacacacaattatgttgagttattcattctcacataatgaaacacaaaac--ttttattcatagcagaaagtggagctcaagttattatagttact |
404 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810831 |
tatgaacacacaattatgctgagttattcattctcacataatgaaacacaagacttttttattcatagcagaaagtggagctcaagttattatagttact |
46810732 |
T |
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| Q |
405 |
agagcctgcatgtacattcttcactcattatgagttacctagct |
448 |
Q |
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| T |
46810731 |
agagcctgcatgtacattcttcactcattatgagatacctagct |
46810688 |
T |
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