View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_high_3 (Length: 420)
Name: NF4491_high_3
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 9963772 - 9963362
Alignment:
| Q |
1 |
tcatcttcttcatcatgcttcattttcttatgataattctttcatacccataagttcttccaatcatcaattaccaaaaaatatggcaatatcacctcaa |
100 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9963772 |
tcatcttcttcttcatgcttcattttcttctaataattctttcatacccttaagttcttccaatcatcaattaccaaaaaatatggcaatatcacctcaa |
9963673 |
T |
|
| Q |
101 |
acattcccaactactaaaccaccatcatcagaaacgtcgtcgtttattaccccaaatatcactaactttaacctcctccattctcttttacacctcacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9963672 |
acattcccaactactaaaccaccatcatcagaaacgtcgtcgtttattaccccaaatatcactaactttaacctcctccattctcttttacacctcacaa |
9963573 |
T |
|
| Q |
201 |
accaaatatgttccttaaacgcagctccatggtgtcgtttccttttaaacaaaatttcttcttccactatacgtaaaacgcacctcctcggtgtcgtttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9963572 |
accaaatatgttccttaaacgcagctccatggtgtcgtttccttttaaacaaaatttcttcttccactatacgtaaaacgcaccttctcggtgtcgtttt |
9963473 |
T |
|
| Q |
301 |
cgatgacctaattcgtaattcagtttcatcttcgaattcaactcgtcaaaattcttatgttctttgtcttgaagaaatgtatattgtgcttcataggatt |
400 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9963472 |
cgatgacctaattcgcaattcagtttcatcttcgaattcaactcgtcaaaattcttatgttctttgtcttgaagaaatgtatattgtgcttcatagggtt |
9963373 |
T |
|
| Q |
401 |
aaaactctgct |
411 |
Q |
| |
|
||||||||||| |
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|
| T |
9963372 |
aaaactctgct |
9963362 |
T |
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