View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4491_high_4 (Length: 388)
Name: NF4491_high_4
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 22082627 - 22083003
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaa |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22082627 |
tttggatcttaaaacaacctataactcaaaaagctatttagcatgatattttatgttgagaatgtgtcttggtagatggtgttatgtatctcattttcaa |
22082726 |
T |
|
| Q |
101 |
attgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggaca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
22082727 |
attgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgtccaagacttaagcttatatgttcggaca |
22082826 |
T |
|
| Q |
201 |
tgaggaagctttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggt |
300 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
22082827 |
tgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggt |
22082926 |
T |
|
| Q |
301 |
ctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtg |
377 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22082927 |
atgccttcaatgtttctgttttgccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtg |
22083003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 19767949 - 19768310
Alignment:
| Q |
15 |
caacctataactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaaattgctatatagtg |
114 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19767949 |
caacctataactcaaaaact-atttagcatgatattttatgttcagaatgtgtcttggtagatggtgttatgtatctcattttcaaattgctatatagtg |
19768047 |
T |
|
| Q |
115 |
ttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggacatgaggaagcttttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19768048 |
ttggtagttgatgtgtttttagatcgtatttgaattaagaacacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagcttttt |
19768147 |
T |
|
| Q |
215 |
cttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtt |
314 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19768148 |
cttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtt |
19768247 |
T |
|
| Q |
315 |
tctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768248 |
tctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtg |
19768310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 45456531 - 45456360
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
45456531 |
tttggatcttaaagcaacctataacccaaaaggttatttagcatgatattttatgttgagaatgtatctttgcagatggtgttatgtatctcattttcaa |
45456432 |
T |
|
| Q |
101 |
attgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
172 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45456431 |
attgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
45456360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 373
Target Start/End: Original strand, 29199652 - 29199821
Alignment:
| Q |
201 |
tgaggaagctttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggt |
300 |
Q |
| |
|
||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
29199652 |
tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttttcctc---tgctacttcaaattcaggc |
29199748 |
T |
|
| Q |
301 |
ctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
373 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
29199749 |
ctgctttcgatgtttctgtttagccattttgtaggatatgctttgttcatttaattttactctttgcgtaatc |
29199821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 373
Target Start/End: Complemental strand, 12572455 - 12572307
Alignment:
| Q |
225 |
gtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagc |
324 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
12572455 |
gtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagc |
12572356 |
T |
|
| Q |
325 |
cattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
373 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
12572355 |
cattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
12572307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 373
Target Start/End: Complemental strand, 13548919 - 13548771
Alignment:
| Q |
225 |
gtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagc |
324 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
13548919 |
gtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagc |
13548820 |
T |
|
| Q |
325 |
cattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
373 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
13548819 |
cattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
13548771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 37617348 - 37616977
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaa |
100 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
37617348 |
tttggatcttaaagcagcctataactcaaaaagctatttagcatgatattttatgttgagaatgtgtcttgatagatggtgttatgtatctcattttcaa |
37617249 |
T |
|
| Q |
101 |
attgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
37617248 |
attgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagcttatatgtccaagacttaagcttatatgttcggaca |
37617149 |
T |
|
| Q |
201 |
tgaggaagctttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggt |
300 |
Q |
| |
|
||||| |||||||||||||||| |||||| || |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
37617148 |
tgagggagctttttcttcgtggctgtcagcgtgtgttatactgcattatgtgttttgtttatgtaagtttttttcctccgctgctacttca-----aggt |
37617054 |
T |
|
| Q |
301 |
ctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtg |
377 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
37617053 |
ctgccttcaatgtttctgtttagccattttgtgcgataggcttttttcattcaattttactctttgcctaatttgtg |
37616977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 40164737 - 40164908
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40164737 |
tttggatcttaaagcaacctataactcaaaaagttatttagcatgatattttatgttgataatgtgtcttggaagatggtgttatgtatctcattttcaa |
40164836 |
T |
|
| Q |
101 |
attgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
172 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40164837 |
attgctatatagcgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
40164908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 373
Target Start/End: Original strand, 4351630 - 4351793
Alignment:
| Q |
210 |
tttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcg |
309 |
Q |
| |
|
||||| ||||||| |||||||| ||||| || ||||| | ||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4351630 |
ttttttttcgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttaggtctgccttcg |
4351729 |
T |
|
| Q |
310 |
atgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
373 |
Q |
| |
|
|| ||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
4351730 |
atttttctttttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
4351793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 6921577 - 6921749
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagtt-atttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttca |
99 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
6921577 |
tttggatcttaaagcaacctataacccaaaaggtttatttagcatgatattttatgttgagaatgtgtctttgcagatggtgttatgtatctcattttca |
6921676 |
T |
|
| Q |
100 |
aattgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
172 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6921677 |
aattgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
6921749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 38238301 - 38238129
Alignment:
| Q |
1 |
tttggaacttaaagcaacctataactcaaaaagtt-atttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttca |
99 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
38238301 |
tttggatcttaaagcaacctataacccaaaaggtttatttagcatgatattttatgttgagaatgtgtctttgcagatggtgttatgtatctcattttca |
38238202 |
T |
|
| Q |
100 |
aattgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
172 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38238201 |
aattgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
38238129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 51389734 - 51389655
Alignment:
| Q |
279 |
cgctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaatttt |
358 |
Q |
| |
|
|||||||||||||| |||| ||||||||| | ||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
51389734 |
cgctgctacttcaatttcaagtctgcctttggtgtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt |
51389655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 7827763 - 7827613
Alignment:
| Q |
22 |
taactcaaaaagttatttagcatgatattttatgttgagaatgtgtcttgacagatggtgttatctatctcattttcaaattgctatatagtgttggtag |
121 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7827763 |
taactcaaaaagttatttagcattatcttttatgctgagaatgtgtcttggcagatgttgttatgtatctcattttcaaattgctatatagtgttggtag |
7827664 |
T |
|
| Q |
122 |
ttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
172 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7827663 |
ttgatatgtttttagattgtatttgaattaagaagacttaagtttatatgt |
7827613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 770338 - 770428
Alignment:
| Q |
280 |
gctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
373 |
Q |
| |
|
||||||||||||| |||| |||||||| | ||||||||||||||| || | |||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
770338 |
gctgctacttcaatttcaattctgcctttggtgtttctgtttagccgtt---tacgatagactttgtctattcaattttactatttgcctaatc |
770428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 32662957 - 32663038
Alignment:
| Q |
284 |
ctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactcttt |
365 |
Q |
| |
|
|||||||| |||| || |||||| | |||| ||||||||| |||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
32662957 |
ctacttcagtttcaagtttgcctttggtgttaatgtttagccgttttgtacgatagagtttgttcattcagttttactcttt |
32663038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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