View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4491_high_5 (Length: 371)

Name: NF4491_high_5
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4491_high_5
NF4491_high_5
[»] chr6 (3 HSPs)
chr6 (3-350)||(17075396-17075743)
chr6 (118-350)||(11053470-11053702)
chr6 (10-122)||(11064036-11064148)
[»] chr8 (2 HSPs)
chr8 (10-350)||(17683923-17684263)
chr8 (7-170)||(36159902-36160065)
[»] chr4 (2 HSPs)
chr4 (4-257)||(10559739-10559992)
chr4 (280-351)||(10558419-10558490)
[»] chr1 (1 HSPs)
chr1 (3-350)||(26741546-26741893)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 17075743 - 17075396
Alignment:
Q  3 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |||||||||| |     
T  17075743 cacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaagaaaccact 17075644  T
Q  103 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 202  Q
     | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | ||  || |||||||| |||| ||||||||    
T  17075643 tttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcagccgcgcca 17075544  T
Q  203 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 302  Q
    |||| |||| |||||  ||||| || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||||||||||||||    
T  17075543 cctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcaccactttctt 17075444  T
Q  303 aaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 350  Q
    ||||||||| |||| ||||||||||||||||||| | |||| ||||||    
T  17075443 aaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg 17075396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 350
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
Q  118 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 217  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  218 ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 316  Q
      ||||| ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  317 tcgaagaaataacaccagcgactccatgatgatg 350  Q
     ||| ||||||||||||||| | |||||||||||    
T  11053503 ccgatgaaataacaccagcgtcaccatgatgatg 11053470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 11064148 - 11064036
Alignment:
Q  10 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 109  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||| |||||| || |||||     
T  11064148 ttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgaggaaaccaccttaacca 11064049  T
Q  110 cctttttaagacg 122  Q
    |||||||||||||    
T  11064048 cctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 17683923 - 17684263
Alignment:
Q  10 ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||| |||||| || | |||     
T  17683923 ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca 17684022  T
Q  110 cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt 209  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| |||||| |||||||||| ||    
T  17684023 cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt 17684122  T
Q  210 caaactaaataccgaatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaaggccgcaccactttcttaa 304  Q
    ||||||||  ||||| ||||||||||  ||||||||||||||||   | |||  | || ||| | | ||||      || |||||||||||||||| | |    
T  17684123 caaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaataggccgcaccactttcctga 17684217  T
Q  305 ccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 350  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||    
T  17684218 ccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg 17684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
Q  7 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 106  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  107 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac 170  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac 36160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 10559992 - 10559739
Alignment:
Q  4 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||||||||| ||     
T  10559992 acaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaagaaaccacct 10559893  T
Q  104 taaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccac 203  Q
    | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||   | |||||||| |||| | || ||||    
T  10559892 ttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcagctgccccac 10559793  T
Q  204 cttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt 257  Q
    ||| ||||||||||  ||||| ||||||| ||  ||||||||||||||||||||    
T  10559792 ctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
Q  280 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatgt 351  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt 10558419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 26741546 - 26741893
Alignment:
Q  3 cacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgcc 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| |||||||||| ||    
T  26741546 cacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaagaaaccacc 26741645  T
Q  103 ctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgcca 202  Q
    || || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||||||| ||||| |||  |||    
T  26741646 cttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcagccgatcca 26741745  T
Q  203 ccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttctt 302  Q
    |||| ||||||||||  ||||  | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| || ||||| ||||    
T  26741746 cctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgccactctctt 26741845  T
Q  303 aaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg 350  Q
    ||||||||| || | ||| ||||||||||||||  | |||||||||||    
T  26741846 aaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg 26741893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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