View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_high_9 (Length: 342)
Name: NF4491_high_9
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 13150307 - 13149977
Alignment:
| Q |
10 |
gataatactagaaaaggttagctgcgcttcgctgaaacttgattcctctctttctctccagctcattgaaacatcaataccttgtgttcgcagagaataa |
109 |
Q |
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| T |
13150307 |
gataatactagaaaaggttagccgcgcttcgctaaaacttgattcctctctttctctccagctcattgaaacatcaataccttgtgtttgcagagaataa |
13150208 |
T |
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| Q |
110 |
taaag-tagccttctactatctctatcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaacaaatc |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13150207 |
taaaggtagccttctactatctctatcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaacaaatc |
13150108 |
T |
|
| Q |
209 |
tcaaataattcatattgtttcttatcaattgcatataattctttggatcattatcaatattttaatcttatattgttttgtgttcaccagatccacgaac |
308 |
Q |
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| T |
13150107 |
tcaaataattcatattgtttcttatcaattgcatataattctttggatcattatcaatattttaatcttatattgttttgtgttcaccagatccacgaac |
13150008 |
T |
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| Q |
309 |
atggcatcaaaaatcactttaaagattatca |
339 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13150007 |
atggcatcaaaaatcactttaaagattatca |
13149977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 13124068 - 13124402
Alignment:
| Q |
6 |
ggtagataatactagaaaaggttagctgcgcttcgctgaaacttgattcctctctttctctccagctcattgaaacatcaataccttgtgttcgcagaga |
105 |
Q |
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|||||||||||||||| |||| ||||||||||||| ||| ||||||| |||||||| | || |||||| | |||||||| ||| ||||||||||| || |
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| T |
13124068 |
ggtagataatactagagaaggc-agctgcgcttcgccgaagcttgattgctctctttttttctagctcactaaaacatcattacattgtgttcgcaaagt |
13124166 |
T |
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| Q |
106 |
ataataaag-tagccttctactat--ctctatcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaa |
202 |
Q |
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| T |
13124167 |
ataataaaggtatccttccactatttctctatctttcattgatgaaaagaatatgtatgcatatatgaattgattgtgatgattacggtatggtgagttg |
13124266 |
T |
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| Q |
203 |
caaatctcaaataattcatattgtttcttatcaattgcatataattctttggatcattatcaatattttaatcttatattgttttgtgttcaccagatcc |
302 |
Q |
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|| || |||||| ||||||||| | | |||||||||||||||| |||||| ||| ||| | |||||||||||||||| ||||||||| |||||||||||| |
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| T |
13124267 |
catatttcaaatcattcatattttgtattatcaattgcatatatttcttttgattatttttaatattttaatcttatcttgttttgtcttcaccagatcc |
13124366 |
T |
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| Q |
303 |
acgaacatggcatcaaaaatcactttaaagattatc |
338 |
Q |
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| T |
13124367 |
acgaatatggcaacaaaactcactttaaagattatc |
13124402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 342
Target Start/End: Complemental strand, 9945539 - 9945328
Alignment:
| Q |
130 |
tctatcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaacaaatctcaaataattcatattgtttc |
229 |
Q |
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||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||| ||| ||||||| |||||| |||||| ||||||||| |||| |
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| T |
9945539 |
tctatctttcattgatgaagagaatatgttcgcatatatgaattgattataattattatggtagggtgagatacaaatttcaaatcattcatattttttc |
9945440 |
T |
|
| Q |
230 |
ttatcaattgcatataattctttggatcattatcaatattttaatcttatattgttttgtgttcaccagatccacgaacatggcatcaaaaatcacttta |
329 |
Q |
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||||||||||||| || || ||||||||||| ||||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||| | |
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| T |
9945439 |
ttatcaattgcatctatttatttggatcattttcaat-ttttaatcttatcttgttttgtcttcaccagatccacgaacatggcaacaaaactcacttca |
9945341 |
T |
|
| Q |
330 |
aagattatcattt |
342 |
Q |
| |
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|| |||||||||| |
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| T |
9945340 |
aatattatcattt |
9945328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 13170879 - 13171206
Alignment:
| Q |
13 |
aatactagaaaaggttagctgcgcttcgctgaaacttgattcctctctttctctccagctcattgaaacatcaataccttgtgttcgcagagaataataa |
112 |
Q |
| |
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||||| ||||| ||| |||||||||||| ||| ||||||| ||||||||| || ||||| |||||| ||| ||||||||||||||| |||||||||| |
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| T |
13170879 |
aatacaagaaatggtcggctgcgcttcgccgaagcttgatttctctctttcgatctggctcactgaaacctcactaccttgtgttcgcaaagaataataa |
13170978 |
T |
|
| Q |
113 |
a-gtagccttctact--atctctatcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaacaaatct |
209 |
Q |
| |
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| |||| |||| ||| |||||||| || ||||||||| ||||| ||| ||||||||||||||||| ||| ||||| | ||| || |||||||| |
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| T |
13170979 |
aggtagtcttccactcactctctatcattcattgatgaatataatttgttcgcatatatgaattgattttaatgatta---tggagtgggatacaaatct |
13171075 |
T |
|
| Q |
210 |
caaataattcatattgtttcttatcaattgcatataattctttggatcattatcaatattttaatcttatattgttttgtgttcaccagatccacgaaca |
309 |
Q |
| |
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|||| ||| ||||| |||||||||| |||||| | ||| ||| || ||| ||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
13171076 |
gaaatcattgatattctttcttatcagttgcatct-attttttatataattttcaat-ttttaatcttatcttgttttgtcttcaccagatccacgaaca |
13171173 |
T |
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| Q |
310 |
tggcatcaaaaatcactttaaagattatcattt |
342 |
Q |
| |
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||||| ||||| | | || |||||||||||||| |
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| T |
13171174 |
tggcaacaaaacttaattcaaagattatcattt |
13171206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 30 - 342
Target Start/End: Original strand, 13201984 - 13202297
Alignment:
| Q |
30 |
gctgcgcttcgctgaaacttgattcctctctttctctccagctcattgaaacatcaataccttgtgttcgcagagaataataaag-tagccttctactat |
128 |
Q |
| |
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|||||||||||| ||| |||||||||| || |||||| |||| |||||| ||| |||||| |||| ||| |||||||||||| ||| |||| ||||| |
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| T |
13201984 |
gctgcgcttcgccgaagcttgattcctgtcattctctttagcttgctgaaacctcactaccttttgtttgcaaagaataataaaggtagacttccactat |
13202083 |
T |
|
| Q |
129 |
ctct--atcttttattgatgaagataatatgtatgcatatatgaattgattataacgattaccgtatggtgagaaacaaatctcaaataattcatattgt |
226 |
Q |
| |
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|||| ||| | ||| ||||||||||||| | ||||||||||||||||||||| ||||| ||| ||| | ||||||||||||| ||| ||||| | |
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| T |
13202084 |
ctctctatcaatcatttatgaagataatattttcgcatatatgaattgattataatgattatggtagagtggtatacaaatctcaaatcattgatatttt |
13202183 |
T |
|
| Q |
227 |
ttcttatcaattgcatataattctttgg-atcattatcaatattttaatcttatattgttttgtgttcaccagatccacgaacatggcatcaaaaatcac |
325 |
Q |
| |
|
||||||||||||| || ||||| ||| |||| | ||||| |||||||||||| ||||||||| | ||||||||||| |||||| || ||||| |||| |
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| T |
13202184 |
ttcttatcaattgaatctaatttttttttatcactttcaat-ttttaatcttatcttgttttgtct--accagatccacaaacatgacaacaaaactcac |
13202280 |
T |
|
| Q |
326 |
tttaaagattatcattt |
342 |
Q |
| |
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|| |||||||||||||| |
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| T |
13202281 |
ttcaaagattatcattt |
13202297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 9945623 - 9945572
Alignment:
| Q |
130 |
tctatcttttattgatgaagataatatgtatgcatatatgaattgattataa |
181 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||| ||| |||||||| |
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|
| T |
9945623 |
tctatctttcattgatgaagagaatatgtacgcatatattaatggattataa |
9945572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 9945792 - 9945738
Alignment:
| Q |
12 |
taatactagaaaaggttagctgcgcttcgctgaaacttgattcctctctttctct |
66 |
Q |
| |
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|||||||||||||||| || |||||||||| || ||||||||||||| |||||| |
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| T |
9945792 |
taatactagaaaaggtcagttgcgcttcgccaaagcttgattcctctcattctct |
9945738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 9945709 - 9945656
Alignment:
| Q |
128 |
tctctatcttttattgatgaagataatatgtatgcatatatgaattgattataa |
181 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| |||||||| ||| |||||||| |
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|
| T |
9945709 |
tctctatcattcattgatgaagagaatatgtacgcatatattaatggattataa |
9945656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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