View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_low_2 (Length: 270)
Name: NF4491_low_2
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 13830255 - 13830330
Alignment:
| Q |
185 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcgattttcttcaatataagtggtattcctcctttg |
260 |
Q |
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| T |
13830255 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcaattttcttcaatataagtggtattcctcctttg |
13830330 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 13830150 - 13830230
Alignment:
| Q |
78 |
caaagcaaaatacaaattaagtgaaatttcacttc-nnnnnnnccccaataa-tatatgtgacattcaatcttctgtttag |
156 |
Q |
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| T |
13830150 |
caaagcaaaatacaaattaagtgaaatttcacttcttttttttccccaataattatatgtgacatccaatcttctgtttag |
13830230 |
T |
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