View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4491_low_3 (Length: 244)
Name: NF4491_low_3
Description: NF4491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4491_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 20632881 - 20632667
Alignment:
| Q |
22 |
ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatttgatactggtatgtttcgcaa |
121 |
Q |
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| T |
20632881 |
ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatatgatactggtatgtttcgcaa |
20632782 |
T |
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| Q |
122 |
ttgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatactgatcatgttcccgagtatact |
221 |
Q |
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| T |
20632781 |
ttgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataagagcatgaaagttttgtatactgatcatgttccggagtatact |
20632682 |
T |
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| Q |
222 |
gctcctgatgatgtc |
236 |
Q |
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| T |
20632681 |
gctcctgatgatgtc |
20632667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20648998 - 20648763
Alignment:
| Q |
1 |
tagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatt |
100 |
Q |
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| T |
20648998 |
tagttggccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaata |
20648899 |
T |
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| Q |
101 |
tgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatact |
200 |
Q |
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| T |
20648898 |
tgatactggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaataggagcatgaaagttttgtatact |
20648799 |
T |
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| Q |
201 |
gatcatgttcccgagtatactgctcctgatgatgtc |
236 |
Q |
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| T |
20648798 |
gatcatgttccggagtatactgctcctgatgatgtc |
20648763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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