View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4492-Insertion-2 (Length: 971)

Name: NF4492-Insertion-2
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4492-Insertion-2
NF4492-Insertion-2
[»] chr3 (21 HSPs)
chr3 (8-971)||(26707213-26708171)
chr3 (8-273)||(26735681-26735946)
chr3 (198-319)||(1627925-1628046)
chr3 (200-318)||(2550168-2550286)
chr3 (207-316)||(16457318-16457427)
chr3 (200-319)||(1654577-1654696)
chr3 (188-319)||(7407722-7407853)
chr3 (200-316)||(13845996-13846112)
chr3 (551-729)||(27604478-27604649)
chr3 (188-297)||(2943182-2943291)
chr3 (207-340)||(9633429-9633562)
chr3 (221-340)||(5498458-5498577)
chr3 (215-319)||(1613208-1613312)
chr3 (249-340)||(27259474-27259565)
chr3 (198-300)||(36035309-36035411)
chr3 (245-302)||(35082994-35083051)
chr3 (550-712)||(7805938-7806098)
chr3 (188-288)||(27713407-27713507)
chr3 (249-300)||(36035039-36035090)
chr3 (221-319)||(2179926-2180026)
chr3 (263-340)||(36035452-36035529)
[»] chr6 (33 HSPs)
chr6 (526-728)||(22713933-22714132)
chr6 (149-311)||(23264425-23264587)
chr6 (200-319)||(16734806-16734925)
chr6 (148-299)||(4485493-4485644)
chr6 (180-319)||(11936727-11936866)
chr6 (207-340)||(29667902-29668037)
chr6 (188-319)||(12591834-12591965)
chr6 (198-316)||(14669324-14669442)
chr6 (198-319)||(6684095-6684215)
chr6 (174-319)||(15361716-15361861)
chr6 (180-308)||(11948707-11948835)
chr6 (218-334)||(23904350-23904466)
chr6 (188-316)||(17719691-17719819)
chr6 (188-297)||(34374848-34374959)
chr6 (236-319)||(15690439-15690522)
chr6 (207-319)||(9631142-9631254)
chr6 (224-319)||(27969921-27970016)
chr6 (224-319)||(4591151-4591246)
chr6 (208-307)||(30481216-30481315)
chr6 (188-318)||(1942571-1942701)
chr6 (239-301)||(10935800-10935862)
chr6 (538-596)||(35160360-35160419)
chr6 (224-316)||(2941009-2941102)
chr6 (198-299)||(10070676-10070776)
chr6 (571-622)||(33319263-33319314)
chr6 (668-725)||(17280993-17281050)
chr6 (525-632)||(5740167-5740275)
chr6 (260-319)||(6673659-6673717)
chr6 (208-275)||(8496639-8496706)
chr6 (653-724)||(28696957-28697028)
chr6 (538-584)||(33319326-33319373)
chr6 (571-622)||(35160418-35160469)
chr6 (224-308)||(6346862-6346946)
[»] chr5 (22 HSPs)
chr5 (188-319)||(17037544-17037675)
chr5 (148-291)||(37233061-37233204)
chr5 (198-340)||(19984975-19985117)
chr5 (174-319)||(5079018-5079163)
chr5 (224-318)||(9333565-9333659)
chr5 (197-299)||(40401986-40402088)
chr5 (200-319)||(7410825-7410944)
chr5 (238-340)||(12042195-12042297)
chr5 (159-289)||(42076078-42076208)
chr5 (224-319)||(9354393-9354488)
chr5 (238-319)||(31068981-31069061)
chr5 (198-316)||(23679445-23679563)
chr5 (198-316)||(23855248-23855366)
chr5 (239-340)||(30786247-30786348)
chr5 (245-300)||(10869457-10869512)
chr5 (257-319)||(18191886-18191948)
chr5 (259-340)||(31571009-31571090)
chr5 (258-319)||(16411592-16411652)
chr5 (148-216)||(18191825-18191895)
chr5 (258-319)||(14117295-14117356)
chr5 (523-621)||(34063881-34063981)
chr5 (279-340)||(38450025-38450086)
[»] chr2 (21 HSPs)
chr2 (188-334)||(11017443-11017589)
chr2 (525-728)||(160665-160864)
chr2 (174-319)||(31342670-31342815)
chr2 (200-319)||(30267004-30267123)
chr2 (520-611)||(39543551-39543642)
chr2 (198-319)||(24479153-24479274)
chr2 (180-319)||(44920959-44921097)
chr2 (200-311)||(7718194-7718305)
chr2 (221-319)||(40016592-40016690)
chr2 (149-299)||(41573414-41573564)
chr2 (188-340)||(7702409-7702561)
chr2 (523-619)||(42042975-42043072)
chr2 (648-729)||(44683709-44683790)
chr2 (200-319)||(15513668-15513787)
chr2 (188-287)||(22966558-22966657)
chr2 (188-317)||(26734754-26734880)
chr2 (247-307)||(27151259-27151319)
chr2 (207-319)||(15540286-15540398)
chr2 (813-880)||(160519-160588)
chr2 (584-625)||(5771534-5771575)
chr2 (255-292)||(7724916-7724953)
[»] chr1 (20 HSPs)
chr1 (200-340)||(28636883-28637023)
chr1 (188-299)||(12189973-12190084)
chr1 (221-319)||(16222779-16222877)
chr1 (210-299)||(3399643-3399732)
chr1 (174-319)||(51758754-51758899)
chr1 (198-334)||(18308134-18308270)
chr1 (525-635)||(4631347-4631458)
chr1 (238-319)||(5911682-5911763)
chr1 (240-311)||(897464-897535)
chr1 (245-340)||(17112905-17113000)
chr1 (237-319)||(15214328-15214410)
chr1 (251-319)||(37097371-37097439)
chr1 (188-302)||(39368607-39368722)
chr1 (648-724)||(14724908-14724984)
chr1 (239-299)||(15204615-15204675)
chr1 (223-312)||(13208620-13208709)
chr1 (239-291)||(1843981-1844033)
chr1 (260-319)||(15193920-15193979)
chr1 (668-725)||(26650563-26650620)
chr1 (523-621)||(19403286-19403386)
[»] chr7 (18 HSPs)
chr7 (200-340)||(26608519-26608659)
chr7 (198-332)||(30089723-30089857)
chr7 (198-316)||(9242462-9242580)
chr7 (180-319)||(20277320-20277459)
chr7 (188-319)||(26621059-26621190)
chr7 (198-340)||(26619082-26619222)
chr7 (221-317)||(26224979-26225075)
chr7 (200-319)||(4685383-4685502)
chr7 (801-880)||(24169538-24169617)
chr7 (200-299)||(26205395-26205494)
chr7 (222-319)||(10022125-10022222)
chr7 (198-302)||(16086505-16086609)
chr7 (170-319)||(3234328-3234477)
chr7 (544-729)||(7874379-7874562)
chr7 (247-301)||(3374320-3374374)
chr7 (226-316)||(16170275-16170365)
chr7 (210-291)||(27135958-27136039)
chr7 (668-725)||(7357934-7357991)
[»] chr8 (20 HSPs)
chr8 (180-319)||(5528744-5528883)
chr8 (180-319)||(6801790-6801929)
chr8 (160-319)||(6403594-6403752)
chr8 (200-319)||(17634451-17634570)
chr8 (200-319)||(28249055-28249174)
chr8 (200-318)||(45356092-45356210)
chr8 (188-316)||(19369878-19370006)
chr8 (200-319)||(25638808-25638927)
chr8 (148-319)||(31347350-31347520)
chr8 (188-316)||(19448452-19448580)
chr8 (188-316)||(19532496-19532624)
chr8 (224-319)||(29345432-29345527)
chr8 (198-319)||(25637645-25637766)
chr8 (239-319)||(5650964-5651044)
chr8 (202-317)||(31369088-31369203)
chr8 (245-319)||(29553630-29553704)
chr8 (188-334)||(5000665-5000811)
chr8 (198-316)||(18766921-18767039)
chr8 (198-340)||(14997601-14997743)
chr8 (221-287)||(6223434-6223500)
[»] chr4 (22 HSPs)
chr4 (223-340)||(4881072-4881189)
chr4 (188-299)||(24558963-24559074)
chr4 (200-319)||(47066014-47066133)
chr4 (200-318)||(43600269-43600387)
chr4 (188-316)||(1684920-1685048)
chr4 (529-634)||(3267834-3267940)
chr4 (245-311)||(48464049-48464115)
chr4 (238-319)||(4904158-4904239)
chr4 (528-672)||(29086038-29086179)
chr4 (207-319)||(53300352-53300464)
chr4 (198-340)||(37750968-37751109)
chr4 (198-299)||(21539250-21539350)
chr4 (188-316)||(1152048-1152176)
chr4 (593-729)||(3267694-3267826)
chr4 (523-632)||(17682218-17682328)
chr4 (148-250)||(48465443-48465545)
chr4 (260-334)||(26075290-26075364)
chr4 (244-308)||(26075221-26075285)
chr4 (198-273)||(21317485-21317560)
chr4 (277-340)||(4923690-4923753)
chr4 (248-294)||(45641677-45641723)
chr4 (238-295)||(18941676-18941733)
[»] scaffold0576 (1 HSPs)
scaffold0576 (174-319)||(6700-6845)
[»] scaffold0069 (1 HSPs)
scaffold0069 (188-311)||(40666-40789)
[»] scaffold0684 (1 HSPs)
scaffold0684 (198-316)||(725-843)
[»] scaffold0002 (1 HSPs)
scaffold0002 (175-334)||(446238-446397)
[»] scaffold0067 (1 HSPs)
scaffold0067 (648-724)||(33415-33491)


Alignment Details
Target: chr3 (Bit Score: 793; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 8 - 971
Target Start/End: Complemental strand, 26708171 - 26707213
Alignment:
Q  8 cagctaattgagctgaagaaattccttgtatatgatcaacacaatcatctacattactgacagcaaatnnnnnnntttcaaacatcaacaaattagaaac 107  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  26708171 cagctaattgtgctgaagaaattccttgtatatggtcaacacaatcatctacattactgacagcaaataaaaaaatttcaaacatcaacaaattagaaac 26708072  T
Q  108 aattttcattgaataaatcatcaattggtagtatactatgaaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26708071 aattttcattgaataaatcatcaattggtagtatactatgaaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatga 26707972  T
Q  208 aatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattt 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26707971 aatgttactgaacctctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattt 26707872  T
Q  308 tcaaatgttactcgattacaattatgtagtagttgtatatcacactctcttcaattgtccctcaactaaagaaatctaattatgggtagtctataaacta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26707871 tcaaatgttactcgattacaattatgtagtagttgtatatcacactctcttcaattgtccctcaactaaagaaatctaattatgggtagtctataaacta 26707772  T
Q  408 tttcagtttataaatccaaaaggtatctgaattgtcattctctctactgtttctaaatgaatcaaggaactaaactaagtagggcatctataatggtgga 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26707771 tttcagtttataaatccaaaaggtatctgaattgtcattctctctactatttctaaatgaatcaaggaactaaactaagtagggcatctataatggtgga 26707672  T
Q  508 tgcgtcatctattaatgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  26707671 tgcgtcatctattaatgttggaacactagttgagtatgagtggaagttggaagagtaaacacacgtccattaggaaagaactagtgttggtatcaattga 26707572  T
Q  608 aaaatgtcccacattggataggacatacatacccactagcagtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgc 707  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26707571 aaaatgtcccacattggataggacatacatacccaccagcagtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgc 26707472  T
Q  708 aaacgggtgagcgcttacgaaannnnnnnnnnnncacatgtgtgacgacgtcgctattgctgtttatccggccaagttgggcttgggctttgacttgggt 807  Q
    ||||||||||||||||||||||            ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  26707471 aaacgggtgagcgcttacgaaa--atatatatatcacatgtgtgatgacgtcgctactgctgtttatccggccaggttgggcttgggctttgacttgggt 26707374  T
Q  808 aagaaagaaatatattttttatcatctgaaaatgttaaattattttttatcaagttaatcattacctggaagcannnnnnnnaaagaataagtttcgtta 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||        |||||||||||||| |||    
T  26707373 aagaaagaaatatattttttatcatctgaaaatgttaaattattttttattaatttaatcattacctggaagca-tttttgtaaagaataagtttcatta 26707275  T
Q  908 ccaattcgatccaacagaatatctgggaaagttccggatatatccactcgcatgagaaccgatc 971  Q
     ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  26707274 -caatttgatccaacagaatatct-ggaaagttccggatatatccactcacatgagaagcgatc 26707213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 26735946 - 26735681
Alignment:
Q  8 cagctaattgagctgaagaaattccttgtatatgatcaacacaatcatctacattactgacagcaaatnnnnnnntttcaaacatcaacaaattagaaac 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||    
T  26735946 cagctaattgtgctgaagaaattccttgtatatgatcaacacaatcatctacattactgacagcaaataaaaaaatttcaaacatcaacaaattaaaaac 26735847  T
Q  108 aattttcattgaataaatcatcaattggtagtatactatgaaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  26735846 aattttcattgaataaatcatcaattggtagtatactatgaaaagtgttacaaaaatatgaatatacaacagttttttaatgttactaataatactatga 26735747  T
Q  208 aatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||||| |||| |||||||||||||  || ||||| |||||||||||||||||||||||||||||    
T  26735746 aatgttattgaagctctttagtaacatggattttacctaacaattgttcaaatgttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 1627925 - 1628046
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||| ||||||  |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  1627925 aatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttgattta 1628024  T
Q  298 gtaaccattttcaaatgttact 319  Q
    || || |||||||| |||||||    
T  1628025 gttacaattttcaagtgttact 1628046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 2550286 - 2550168
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | ||||||||||| || |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2550286 tactataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 2550187  T
Q  300 aaccattttcaaatgttac 318  Q
     || |||||||| ||||||    
T  2550186 tacaattttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 16457318 - 16457427
Alignment:
Q  207 aaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccat 305  Q
    ||||||||||||| || |||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  16457318 aaatgttactgaagctttttagtaacacgag-ctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaat 16457416  T
Q  306 tttcaaatgtt 316  Q
    |||||| ||||    
T  16457417 tttcaattgtt 16457427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 1654696 - 1654577
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | ||||| ||||| || |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  1654696 tactataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 1654597  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  1654596 tacaattttcaattgttact 1654577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 7407722 - 7407853
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||||| | |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| ||||||||||||||||| |||||    
T  7407722 tgttactgatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttt 7407821  T
Q  288 tcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||| || |||||||| |||||||    
T  7407822 tcttgatttagttacaattttcaagtgttact 7407853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 13846112 - 13845996
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  13846112 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 13846013  T
Q  300 aaccattttcaaatgtt 316  Q
     || |||||||| ||||    
T  13846012 tacaattttcaagtgtt 13845996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 551 - 729
Target Start/End: Original strand, 27604478 - 27604649
Alignment:
Q  551 aagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacattggataggacatacatacccactagcagt 650  Q
    |||||||| || |||||||||||||  ||| |||||| |||||||||||| ||||||||||||||||||||| ||||    | ||||||||||   ||||    
T  27604478 aagttggatgaataaacacatgtcctgtagaaaagaattagtgttggtatgaattgaaaaatgtcccacattagata----agacatacccac---cagt 27604570  T
Q  651 gcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttacgaaa 729  Q
    | ||||||||||| | ||||||| |||||| ||| || ||| || ||| ||||||| ||||||  ||||||||||||||    
T  27604571 gtttatataagtgagaggtgacctccaagggtgttcccttgtggcacccacttttgtaaacggaagagcgcttacgaaa 27604649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 2943182 - 2943291
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| || | |||||||||||  | ||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  2943182 tgttacagataatactataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttt 2943281  T
Q  288 tcttgattta 297  Q
    ||||||||||    
T  2943282 tcttgattta 2943291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 9633429 - 9633562
Alignment:
Q  207 aaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccatt 306  Q
    |||||| ||| || |||||||||||||| | |||||| ||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||   ||    
T  9633429 aaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagtaacatttttttcgatttagtaatagtt 9633528  T
Q  307 ttcaaatgttactcgattacaattatgtagtagt 340  Q
    ||||| |||||||  ||  ||||||||| |||||    
T  9633529 ttcaagtgttactaaatctcaattatgttgtagt 9633562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 5498577 - 5498458
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactc 320  Q
    ||||||||||||| ||  ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||  |||| || |||||||     
T  5498577 ctctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgttacta 5498478  T
Q  321 gattacaattatgtagtagt 340  Q
     ||  ||||||||| |||||    
T  5498477 aatctcaattatgttgtagt 5498458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 1613208 - 1613312
Alignment:
Q  215 ctgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatg 314  Q
    ||||| || ||||||||||| | |||||| ||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||  ||||||| ||    
T  1613208 ctgaagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttcttgatttagttacatttttcaactg 1613307  T
Q  315 ttact 319  Q
    |||||    
T  1613308 ttact 1613312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 27259474 - 27259565
Alignment:
Q  249 aattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||| |||||||  ||  ||||||||| |||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttactaaatctcaattatgttgtagt 27259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 36035411 - 36035309
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattt 296  Q
    |||||||| |||||| ||| || ||||||||||||| ||| |||||| |||||||||| ||| |||||||||||||||||||||  ||||||||||||||    
T  36035411 aatactataaaatgtaactaaagctctttagtaacacgag-ctttacctaacaattgtacaattgttactaaatttaattagtattatttttcttgattt 36035313  T
Q  297 agta 300  Q
    ||||    
T  36035312 agta 36035309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 35083051 - 35082994
Alignment:
Q  245 taacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaac 302  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||    
T  35083051 taacaattgttcaaatattactaaatttatttactaacatttttcttgattttgtaac 35082994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 712
Target Start/End: Original strand, 7805938 - 7806098
Alignment:
Q  550 gaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaa--aatgtcccacattggataggacatacatacccactagc 647  Q
    |||||| |||||| || |||  ||||| | ||| ||||||||||||||| |  |||||||  |||||||||||| ||| |||||| |     |||||||     
T  7805938 gaagttagaagaggaatcaccagtcccattggatagaactagtgttggtgtgtattgaaataaatgtcccacataggagaggacacaa----ccactagt 7806033  T
Q  648 agtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacg 712  Q
    |||| |||||||||||| || | ||| ||||||||||||| |||||||||  |||||||| ||||    
T  7806034 agtgtttatataagtggtggatcacctccaaggatgtgcccttggggtacttacttttgctaacg 7806098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 27713407 - 27713507
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||| | |||||||| |||| || || || || |||||||||| ||  ||| | |||||||| || |||||||||||||||||||||||||| ||||    
T  27713407 tgttactaataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaacttttt 27713506  T
Q  288 t 288  Q
    |    
T  27713507 t 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 36035090 - 36035039
Alignment:
Q  249 aattgttcaaatgttactaaatttaattagtaacatttttcttgatttagta 300  Q
    |||||| ||| |||||||||||||||||||||  ||||||||||||||||||    
T  36035090 aattgtacaattgttactaaatttaattagtattatttttcttgatttagta 36035039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 2180026 - 2179926
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaaca--tttttcttgatttagtaaccattttcaaatgttac 318  Q
    |||||||||||||| || |||||  || ||||||||||||| | ||||||||||| | |||||  ||||| || |||||||||| |||||||  ||||||    
T  2180026 ctctttagtaacagggaatttacccaagaattgttcaaatgattctaaatttaatcattaacatttttttttttatttagtaacaattttcaggtgttac 2179927  T
Q  319 t 319  Q
    |    
T  2179926 t 2179926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 36035529 - 36035452
Alignment:
Q  263 tactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||||||||| || ||||  |||||||||||| ||||||| ||||| || ||||||| |||  ||||||||| |||||    
T  36035529 tactaaatttgatcagtattatttttcttgatatagtaacaattttgaagtgttactagatgtcaattatgttgtagt 36035452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 6e-46; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 526 - 728
Target Start/End: Complemental strand, 22714132 - 22713933
Alignment:
Q  526 tggaacactagttgagtatgagtggaagttggaa-gagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacattgg 624  Q
    ||||||||||||||  | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  22714132 tggaacactagttggatttgagtggaagttggaaagaataaacacatgtcccttaggaaagaactagtgttggtatgaattgaaaaatgtctcacattgg 22714033  T
Q  625 ataggacatacatacccactagcagtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgctta 724  Q
     ||||||| || |    ||||| |||| |||||||||||| | |||||| | |||| |||| | |||||||||| | |||| ||||||||||||||||||    
T  22714032 ttaggacacactt----actagtagtgtttatataagtggagagtgacctctaagggtgtgtccttggggtacccagttttacaaacgggtgagcgctta 22713937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 23264425 - 23264587
Alignment:
Q  149 aaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataac 248  Q
    |||||||||||||||||  ||||   |||| ||||||| |||| |||| |||||||| || | || ||||| |||||||||||||  || ||||| ||||    
T  23264425 aaagtgttacaaaaatacaaataagtaacatttttttagtgtttctgataatactataaagttttgctgaagctctttagtaacacggattttacctaac 23264524  T
Q  249 aattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaa 311  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  23264525 aattgttcgaatgttactaaatttaattagtaacaattttcttgatttagtaacaattttcaa 23264587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 16734925 - 16734806
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16734925 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagt 16734826  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  16734825 tacaattttcaagtgttact 16734806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 148 - 299
Target Start/End: Original strand, 4485493 - 4485644
Alignment:
Q  148 aaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataa 247  Q
    ||||||||| ||||||||| ||||| ||||| ||||||| ||||||| | ||| ||||  | ||||||| || || |||| |||||  |||||||| |||    
T  4485493 aaaagtgttgcaaaaatataaatatgcaacatttttttaatgttactaataattctatagattgttactaaaactatttaataacacggactttacctaa 4485592  T
Q  248 caattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    ||||| ||||||| ||||||||||||||||||| |||||| |||||||||||    
T  4485593 caattattcaaatattactaaatttaattagtaccattttccttgatttagt 4485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 11936727 - 11936866
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagt 279  Q
    ||||||| |||||| || | |||||| |||||| ||| || | |||||||||||  | |||||  |||||||||||||| |||| |||||||||||||||    
T  11936727 ttttttattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagt 11936826  T
Q  280 aacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||| || |||||||| |||||||    
T  11936827 aacatttttcttgatttagttacaattttcaagtgttact 11936866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 29667902 - 29668037
Alignment:
Q  207 aaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttc--ttgatttagtaacca 304  Q
    |||||||||| || ||||||| ||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| || || |    
T  29667902 aaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgttacaa 29668001  T
Q  305 ttttcaaatgttactcgattacaattatgtagtagt 340  Q
    ||||||| ||||||  |||  ||||||||| |||||    
T  29668002 ttttcaattgttacaagatctcaattatgttgtagt 29668037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 12591965 - 12591834
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| || ||| ||| || |||||||||||||  | |||||| |||||||||||| |  ||||||||||||||||| |||||||||    
T  12591965 tgttacagataatactataaattgtaactaaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttt 12591866  T
Q  288 tcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||| || |||||||| |||||||    
T  12591865 tcttgatttagttacaattttcaagtgttact 12591834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 14669324 - 14669442
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||  |||||||| |||||||| ||| | |||| | |||||||||||||||||||||||||||||||    
T  14669324 aatactataaaatgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgattta 14669423  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  14669424 gttacaattttcaagtgtt 14669442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 6684215 - 6684095
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||  |||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||| |    
T  6684215 aatactataaaatgtaactaaaactctttagtaacatggactttacctaacaat-gttcgagtgttactaaatttaattagtaacatttttcttgattaa 6684117  T
Q  298 gtaaccattttcaaatgttact 319  Q
    || || ||||| || |||||||    
T  6684116 gttacaatttttaagtgttact 6684095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 15361861 - 15361716
Alignment:
Q  174 caacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||| ||||| | |||||| || | |||||| |||||| ||| || |  ||||||||||  | |||||| |||||||||||||| |||| |||||||||    
T  15361861 caacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaattta 15361762  T
Q  274 attagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||||||| || ||||| || |||||||    
T  15361761 attagtaacatttttcttgatttagttacaatttttaagtgttact 15361716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 11948707 - 11948835
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagt 279  Q
    ||||||| |||||| || | |||||| |||||| ||| || | |||||||||||  | |||||  |||||||||||||| |||| |||||||||||||||    
T  11948707 ttttttattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagt 11948806  T
Q  280 aacatttttcttgatttagtaaccatttt 308  Q
    |||||||||||||||||||| || |||||    
T  11948807 aacatttttcttgatttagttacaatttt 11948835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 23904350 - 23904466
Alignment:
Q  218 aacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgtta 317  Q
    ||||||||| |||| || | |||||| ||||||||||||||||||||||||||| | |||||||| |||||||| |||||||| | |||||||| |||||    
T  23904350 aacctcttttgtaagaggggctttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagtagcaattttcaagtgtta 23904449  T
Q  318 ctcgattacaattatgt 334  Q
    || |||  |||||||||    
T  23904450 ctagatctcaattatgt 23904466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 17719691 - 17719819
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| || ||| ||| || |||||||||||||  |||||||  |||||||||||| | |||| | ||| |||||||||||||||||    
T  17719691 tgttacagataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttt 17719790  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||||| || |||||||| ||||    
T  17719791 tcttgatttagttacaattttcaagtgtt 17719819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 34374959 - 34374848
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaatt--gttcaaatgttactaaatttaattagtaacatt 285  Q
    ||||||| | |||||||| |||| ||||| || ||||||||||||| ||| ||| | ||||||||  ||||||||||||| |||| ||||||||||||||    
T  34374959 tgttactcataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttcaaatgttacaaaatataattagtaacatt 34374860  T
Q  286 tttcttgattta 297  Q
    ||||||||||||    
T  34374859 tttcttgattta 34374848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 15690522 - 15690439
Alignment:
Q  236 gactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||  |||||||||||  | ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  15690522 gactttagctaacaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttact 15690439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 9631142 - 9631254
Alignment:
Q  207 aaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccatt 306  Q
    |||||| ||| || |||| ||||||||| | || | | ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||   ||    
T  9631142 aaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttcttcttgatttagtaatagtt 9631241  T
Q  307 ttcaaatgttact 319  Q
    ||||| |||||||    
T  9631242 ttcaagtgttact 9631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 27969921 - 27970016
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||| ||||||||| ||||| ||||| ||||||| ||||||| || ||||||||| ||||||| ||| || || ||||||||||||||||    
T  27969921 tttagtaacatagactttacctaacatttgttgaaatgttgctaaattgaaatagtaacatatttcttgctttggttacaattttcaaatgttact 27970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 4591246 - 4591151
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||| | ||||| ||| |||||||||| |||| |||| | | ||||||  ||||||||||||||||||||||||  ||||||||||||||||    
T  4591246 tttagtaatacagactatacctaacaattgtacaaaggttattgattttaatcggtaacatttttcttgatttagtaataattttcaaatgttact 4591151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 30481216 - 30481315
Alignment:
Q  208 aatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattt 307  Q
    ||||||| |||| |||||||||||||    |||||  ||| | |||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  30481216 aatgttattgaagctctttagtaacatgatctttatctaaaatttgttcaattgttactagatttaattagcaacatttttcttgatttagtaacaattt 30481315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 1942701 - 1942571
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| ||  | |||| ||||| ||  ||||| || |||||| |||||||||| ||||||| || ||||| |||||    
T  1942701 tgttacagataatactataaaatgtaactaaagatatttaataacaaaggttttacctagcaattgctcaaatgttattaaattttatcagtaatatttt 1942602  T
Q  288 tcttgatttagtaaccattttcaaatgttac 318  Q
    |||||||||||| || ||| |||||||||||    
T  1942601 tcttgatttagttacaattatcaaatgttac 1942571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 10935800 - 10935862
Alignment:
Q  239 tttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaa 301  Q
    ||||| ||||||||||||||||||||||  || |||||||||||||||||| |||||||||||    
T  10935800 tttacctaacaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaa 10935862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 35160360 - 35160419
Alignment:
Q  538 tgagtatgagtggaagttgg-aagagtaaacacatgtcccttaggaaagaactagtgttg 596  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  35160360 tgagtttgagtggaagttggcaagaataaacacatgtcccttaggaaagaattagtgttg 35160419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 2941102 - 2941009
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacat-ttttcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||| | ||||||| ||||| ||| |||||||||||||||  ||||||||||||| |||| ||||||| || || ||||| |||||||    
T  2941102 tttagtaacacaaactttacctaacatttgctcaaatgttactaaacataattagtaacatctttttttgattttgttacaatttttaaatgtt 2941009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 10070776 - 10070676
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || || ||||||||||  |||||||| |||||||| ||  | ||||| |||||||||||||||||| |||| ||||||||    
T  10070776 aatactataaaatgtaactaaaact-tttagtaacacggactttacgtaacaattatttgagtgttattaaatttaattagtaacaattttgttgattta 10070678  T
Q  298 gt 299  Q
    ||    
T  10070677 gt 10070676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 33319314 - 33319263
Alignment:
Q  571 tgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacatt 622  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||| |||||||    
T  33319314 tgtcctttaagaaagaactagtgttggtataaattgaaaaatgttccacatt 33319263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 17280993 - 17281050
Alignment:
Q  668 gtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttac 725  Q
    |||||| |||||| |||||| || | ||||| ||||||||||||||||||||||||||    
T  17280993 gtgacctccaagggtgtgcccttcgcgtacccacttttgcaaacgggtgagcgcttac 17281050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 632
Target Start/End: Original strand, 5740167 - 5740275
Alignment:
Q  525 ttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattg-aaaaatgtcccacattg 623  Q
    |||||||| ||||||||| |  |||||||||||||||||||||| | ||||| |  || | ||||||||||||  | ||| | ||||||||||||||| |    
T  5740167 ttggaacattagttgagtttatgtggaagttggaagagtaaacagaagtcccatttgataaaactagtgttggcgtgaatagaaaaaatgtcccacatgg 5740266  T
Q  624 gataggaca 632  Q
    || ||||||    
T  5740267 gagaggaca 5740275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 6673659 - 6673717
Alignment:
Q  260 tgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  ||||||| |||||||    
T  6673659 tgttactaaatttt-ttagtaacatttttcttgatttagttacatttttcaactgttact 6673717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 8496639 - 8496706
Alignment:
Q  208 aatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaat 275  Q
    |||||||||||| ||||||||||||| ||| |||   | |||||||||||||||||| ||||| ||||    
T  8496639 aatgttactgaaactctttagtaacatagattttgtctgacaattgttcaaatgttattaaatataat 8496706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 724
Target Start/End: Original strand, 28696957 - 28697028
Alignment:
Q  653 ttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgctta 724  Q
    ||||||||| | ||||||||| | |||| |||||  |||||||||| ||||||| ||||| |||||||||||    
T  28696957 ttatataagggtggggtgacctctaagggtgtgcacttggggtacccacttttgtaaacgagtgagcgctta 28697028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 33319373 - 33319326
Alignment:
Q  538 tgagtatgagtggaagttgg-aagagtaaacacatgtcccttaggaaa 584  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  33319373 tgagtttgagtggaagttggcaagaataaacacatgtcccttaggaaa 33319326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 622
Target Start/End: Original strand, 35160418 - 35160469
Alignment:
Q  571 tgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacatt 622  Q
    ||||| ||| ||||||||||||||| |||| ||||||||||||| |||||||    
T  35160418 tgtcctttaagaaagaactagtgttagtataaattgaaaaatgttccacatt 35160469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 6346862 - 6346946
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacattt-ttcttgatttagtaaccatttt 308  Q
    |||||||||| || |||||| ||||| || | |||||||||| |||||||| ||||||||||| || |||||||||| || |||||    
T  6346862 tttagtaacataggctttacctaacatttat-caaatgttacaaaatttaaatagtaacatttatttttgatttagttacaatttt 6346946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 17037675 - 17037544
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| || |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17037675 tgttacagataatactataaaatgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttt 17037576  T
Q  288 tcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||| || |||||||| |||||||    
T  17037575 tcttgatttagttacgattttcaagtgttact 17037544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 37233204 - 37233061
Alignment:
Q  148 aaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataa 247  Q
    ||||||||||| ||||||| |||||  || ||||||| | ||||||||| |||||||| ||||||||||||| || ||||||||||  |||| ||| |||    
T  37233204 aaaagtgttacgaaaatataaatatgaaatagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa 37233105  T
Q  248 caattgttcaaatgttactaaatttaattagtaacatttttctt 291  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  37233104 caattgctcaaatgttactaaatttaattagtaacttttttctt 37233061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 19985117 - 19984975
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || ||||||||||||   |||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  19985117 aatactataaaatgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgattta 19985018  T
Q  298 gtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    || ||||||||| | ||||||| | | | |||||||| |||||    
T  19985017 gttaccattttcgagtgttactagttcataattatgttgtagt 19984975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 5079018 - 5079163
Alignment:
Q  174 caacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||| ||||| | |||||| || | |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| |||||||||    
T  5079018 caacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaattta 5079117  T
Q  274 attagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||||||| || |||||||| |||||||    
T  5079118 attagtaacatttttcttgatttagttacaattttcaagtgttact 5079163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 9333565 - 9333659
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttac 318  Q
    ||||||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||    
T  9333565 tttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattttcaattgttac 9333659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 40401986 - 40402088
Alignment:
Q  197 gaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattt 296  Q
    ||||||||| ||||||| ||||| || ||||| |||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  40401986 gaatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctttattt 40402085  T
Q  297 agt 299  Q
    |||    
T  40402086 agt 40402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 7410944 - 7410825
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  7410944 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagt 7410845  T
Q  300 aaccattttcaaatgttact 319  Q
     || ||||| ||||||||||    
T  7410844 tacaattttgaaatgttact 7410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 12042195 - 12042297
Alignment:
Q  238 ctttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagt 337  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| ||||| |||   |||||||| ||    
T  12042195 ctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaattttcaaatattactggatcttaattatgttgt 12042294  T
Q  338 agt 340  Q
    |||    
T  12042295 agt 12042297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 159 - 289
Target Start/End: Complemental strand, 42076208 - 42076078
Alignment:
Q  159 aaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaa 258  Q
    |||||||| |||||  |||| ||||| | |||||| || |||||||| |||| || ||||| || ||||||||||  |||||||  ||||||||||||||    
T  42076208 aaaaatataaatatgtaacaatttttaaatgttaccgataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaa 42076109  T
Q  259 atgttactaaatttaattagtaacatttttc 289  Q
    ||||||||||||||||||||||||| |||||    
T  42076108 atgttactaaatttaattagtaacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 9354393 - 9354488
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||||||||  | |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |||||||| |||||||    
T  9354393 tttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttact 9354488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 31068981 - 31069061
Alignment:
Q  238 ctttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||    
T  31068981 ctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttact 31069061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 23679563 - 23679445
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||   ||||||  ||| |||||||| |||||| | ||||||||||| |||||||||||||||||||    
T  23679563 aatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgattta 23679464  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  23679463 gttacaattttcaagtgtt 23679445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 23855248 - 23855366
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||   ||||||  ||| |||||||| |||||| | ||||||||||| |||||||||||||||||||    
T  23855248 aatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgattta 23855347  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  23855348 gttacaattttcaagtgtt 23855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 239 - 340
Target Start/End: Complemental strand, 30786348 - 30786247
Alignment:
Q  239 tttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagta 338  Q
    ||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||| || |||||||| ||||||| |||   |||||||| |||    
T  30786348 tttacctaacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttactagatcttaattatgttgta 30786249  T
Q  339 gt 340  Q
    ||    
T  30786248 gt 30786247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 10869512 - 10869457
Alignment:
Q  245 taacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagta 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  10869512 taacaattgttcaaatgttactaaatttaattagtaacaattttcatgatttagta 10869457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 18191886 - 18191948
Alignment:
Q  257 aaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttact 18191948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 31571090 - 31571009
Alignment:
Q  259 atgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||||||||| |||||| |||||||||||||||| |||| |||| |||||||| ||||||| |||  ||||||||| |||||    
T  31571090 atgttactaattttaatcagtaacatttttcttgttttaataacaattttcaagtgttactagatgtcaattatgttgtagt 31571009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 16411652 - 16411592
Alignment:
Q  258 aatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||| || |||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  16411652 aatgttactagatataatcagtaacatttttcgtgatttagtaa-tattttcaaatgttact 16411592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 18191825 - 18191895
Alignment:
Q  148 aaaagtgttacaaaaatatg--aatatacaacagttttttactgttactgagaatactatgaaatgttact 216  Q
    |||||||||||||||||||   |||||  |||| ||||| ||||||||||| |||||||| ||||||||||    
T  18191825 aaaagtgttacaaaaatatataaatatgtaacaatttttaactgttactgataatactattaaatgttact 18191895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 14117356 - 14117295
Alignment:
Q  258 aatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||| || ||| |||| ||||||| ||||||||||  ||| |||||||||||    
T  14117356 aatgttactaaattaaaatagcaacaattttcttcatttagtaacattttccaaatgttact 14117295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 621
Target Start/End: Original strand, 34063881 - 34063981
Alignment:
Q  523 tgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattg--aaaaatgtcccaca 620  Q
    |||| ||||||||||||| | ||| || |||||| ||||||||| ||| || || | ||| ||||| ||||||||| | |||||  ||||||||||||||    
T  34063881 tgtttgaacactagttgaatttgactgaaagttgaaagagtaaatacaagttccattggatagaaccagtgttggtgtgaattgaaaaaaatgtcccaca 34063980  T
Q  621 t 621  Q
    |    
T  34063981 t 34063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 38450025 - 38450086
Alignment:
Q  279 taacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||||||||||||||||| ||||| |||||||  ||||||| |||  ||||||||| |||||    
T  38450025 taacatttttcttgatttggtaacaattttcatgtgttactagatgtcaattatgttgtagt 38450086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 11017589 - 11017443
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||||| |||||||| || |||||||||| || ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||||||| |||    
T  11017589 tgttactgataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagtaacaattt 11017490  T
Q  288 tcttgatttagtaaccattttcaaatgttactcgattacaattatgt 334  Q
    |||| ||||||||||  ||||||| ||||||| |||  |||||||||    
T  11017489 tctttatttagtaacggttttcaattgttactagatctcaattatgt 11017443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 525 - 728
Target Start/End: Complemental strand, 160864 - 160665
Alignment:
Q  525 ttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattg-aaaaatgtcccacattg 623  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| || || | | ||||||||||||||||||| ||||| ||||||||| ||| ||     
T  160864 ttggaacactagttgaatttgagtggaagttggaagagtaaacacaagttccattgaaaagaactagtgttggtatgaattgaaaaaatgtctcacgttc 160765  T
Q  624 gataggacatacatacccactagcagtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgctt 723  Q
     | |||    ||||||||||||| |||| |||||||||| |||||| | | |||||||||| || |||||| | | ||||||||||||| ||||||||||    
T  160764 aaaagg----acatacccactagtagtgtttatataagt-gggggtaatctccaaggatgtacccttggggaatccacttttgcaaacgagtgagcgctt 160670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 31342670 - 31342815
Alignment:
Q  174 caacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||| ||||| | |||||| || | |||||| |||||| ||| || | |||||||||||  | |||||  |||||||||||||| |||| |||||||||    
T  31342670 caacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaattta 31342769  T
Q  274 attagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||||||| || |||||||| |||||||    
T  31342770 attagtaacatttttcttgatttagttacaattttcaagtgttact 31342815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 30267123 - 30267004
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || |||||| ||||||  | |||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  30267123 tactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagt 30267024  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  30267023 tacaattttcaagtgttact 30267004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 520 - 611
Target Start/End: Complemental strand, 39543642 - 39543551
Alignment:
Q  520 taatgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaa 611  Q
    |||||||||||||| |||||||| |||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  39543642 taatgttggaacacaagttgagtttgagtgaaagttgaaagaataaacacatgttccttaggaaagaactaatgttggtatgaattgaaaaa 39543551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 24479274 - 24479153
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattt 296  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||    
T  24479274 aatactataaaatataactaaagctctttagtaacacgag-ctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttgattt 24479176  T
Q  297 agtaaccattttcaaatgttact 319  Q
    |||||  |||||||| |||||||    
T  24479175 agtaataattttcaagtgttact 24479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 44921097 - 44920959
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattag 278  Q
    ||||||| |||||| || | |||||| |||||| ||| || ||||||||||||| ||| |||||| ||||||||||| |  |||||||||||||||||||    
T  44921097 ttttttattgttacggatagtactataaaatgtaactaaaactctttagtaacacgag-ctttacctaacaattgtttaggtgttactaaatttaattag 44920999  T
Q  279 taacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||| |||||||||| || |||||||| |||||||    
T  44920998 taacattttt-ttgatttagttacaattttcaagtgttact 44920959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 7718305 - 7718194
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| | | || |||||||||||||  |||||||  |||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  7718305 tactataaaatgtaattaaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagt 7718206  T
Q  300 aaccattttcaa 311  Q
     || ||||||||    
T  7718205 tacaattttcaa 7718194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 40016690 - 40016592
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||  |||||||| |||||||    
T  40016690 ctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcagtaacattttacttgatttaataataattttcaagtgttact 40016592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 41573564 - 41573414
Alignment:
Q  149 aaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataac 248  Q
    |||||||||||||||||  || |  ||||| ||| | | ||||||| | |||||||| |||||||| ||||    ||||||||||  |  ||||| ||||    
T  41573564 aaagtgttacaaaaatacaaaaaagcaacattttctaaatgttactaataatactataaaatgttattgaagtaatttagtaacacggggtttacctaac 41573465  T
Q  249 aattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  41573464 aattgtttaactgttactaaatttaattagtaacatttttcttgatttagt 41573414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 188 - 340
Target Start/End: Complemental strand, 7702561 - 7702409
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||  |||||| ||| || ||||||||||| |  | |||||| |||||||||| ||||||||||||| |||||||| |||||||||    
T  7702561 tgttacagataatactacaaaatgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaataacatttt 7702462  T
Q  288 tcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    | || |||||||||  |||||||  ||||||| |||  ||||||||| |||||    
T  7702461 ttttaatttagtaataattttcatgtgttactagatgtcaattatgttgtagt 7702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 523 - 619
Target Start/End: Original strand, 42042975 - 42043072
Alignment:
Q  523 tgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattg-aaaaatgtcccac 619  Q
    |||||||||||||||||| | |||||| ||||| |||||||||||||||||||| |  || ||||||||||||||| | ||||| |||||||||||||    
T  42042975 tgttggaacactagttgaatgtgagtgaaagttagaagagtaaacacatgtcccattagatagaactagtgttggtgtgaattgtaaaaatgtcccac 42043072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 648 - 729
Target Start/End: Complemental strand, 44683790 - 44683709
Alignment:
Q  648 agtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttacgaaa 729  Q
    |||| |||||||||||| ||||||||  ||||||||||  |||||||||||||||||||| ||||||||||| |||||||||    
T  44683790 agtgtttatataagtggagggtgacctacaaggatgtgtgtttggggtaccaacttttgcgaacgggtgagcacttacgaaa 44683709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 15513787 - 15513668
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttag 298  Q
    |||||| |||||| ||| || || |||||||||| ||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||     
T  15513787 tactataaaatgtaactaaatctttttagtaacacgag-ctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttgatttac 15513689  T
Q  299 taaccattttcaaatgttact 319  Q
    | || ||||| || |||||||    
T  15513688 ttacaatttttaattgttact 15513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 22966657 - 22966558
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||| | |||||| ||| ||  ||||||||||||| | |||||| ||||||||||| |||||| ||||||||| |||||||| |||||    
T  22966657 tgttacagataatactctaaaatgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaatatttt 22966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 26734880 - 26734754
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||||| |||| | | ||||| |||| || ||||||| ||| |  |||||||| |||||||| ||||||| || ||||||||||||| |||  ||||    
T  26734880 tgttactgataatattgtaaaatgatactaaagctctttaataatatggactttacctaacaattattcaaatattgctaaatttaattaataagttttt 26734781  T
Q  288 tcttgatttagtaaccattttcaaatgtta 317  Q
    ||||||||   |||| ||||||||||||||    
T  26734780 tcttgatt---taacaattttcaaatgtta 26734754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 27151259 - 27151319
Alignment:
Q  247 acaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattt 307  Q
    |||||||| ||| ||| ||||| |||||||||| |||||||||||||||||||||| ||||    
T  27151259 acaattgtacaagtgtcactaattttaattagtgacatttttcttgatttagtaacaattt 27151319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 15540286 - 15540398
Alignment:
Q  207 aaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacat-ttttcttgatttagtaaccat 305  Q
    ||||||||||||  |  ||||||| || | ||||||| || |||||||| ||||||||||| || ||||||||||||| ||||  |||||||||||   |    
T  15540286 aaatgttactgataccgtttagtaccacaaactttacctatcaattgtt-aaatgttactagatataattagtaacatatttttgtgatttagtaatact 15540384  T
Q  306 tttcaaatgttact 319  Q
    ||||||||||||||    
T  15540385 tttcaaatgttact 15540398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 813 - 880
Target Start/End: Complemental strand, 160588 - 160519
Alignment:
Q  813 agaaatatatttttt-atcatctgaaaatgttaaattatt-ttttatcaagttaatcattacctggaagc 880  Q
    ||||||||||||||| |||| || |||||||||||||||| |||||| || |||||||||| ||| ||||    
T  160588 agaaatatatttttttatcacctaaaaatgttaaattatttttttattaatttaatcattatctgaaagc 160519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 625
Target Start/End: Complemental strand, 5771575 - 5771534
Alignment:
Q  584 agaactagtgttggtatcaattgaaaaatgtcccacattgga 625  Q
    ||||||||||||||||| ||||||||||| || |||||||||    
T  5771575 agaactagtgttggtatgaattgaaaaatatctcacattgga 5771534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 7724953 - 7724916
Alignment:
Q  255 tcaaatgttactaaatttaattagtaacatttttcttg 292  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  7724953 tcaaatattactaaatttaaatagtaacatttttcttg 7724916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 8e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 28637023 - 28636883
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || |||||||| ||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28637023 tactataaaatgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagt 28636924  T
Q  300 aaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
     || ||||| |||||||||| |||   |||||||| |||||    
T  28636923 tacaatttttaaatgttactagatcttaattatgttgtagt 28636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 12190084 - 12189973
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||| | |||||||| |||  ||||| || |||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  12190084 tgttactaataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttt 12189985  T
Q  288 tcttgatttagt 299  Q
    ||||||||||||    
T  12189984 tcttgatttagt 12189973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 16222877 - 16222779
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||  | |||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  16222877 ctctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgttact 16222779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 3399732 - 3399643
Alignment:
Q  210 tgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| ||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3399732 tgttaccgaagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagt 3399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 51758899 - 51758754
Alignment:
Q  174 caacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaattt 272  Q
    ||||| ||||| | |||||| || |||||||| |||||| ||| || ||||||||||| | ||| |||||| ||| |||||||| | |||| ||||||||    
T  51758899 caacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaatacgag-ctttacctaataattgttcgagtgttgctaaattt 51758801  T
Q  273 aattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||    
T  51758800 aattactaacatttttcttgatttagttacaattttcaaatgttact 51758754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 18308270 - 18308134
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || | ||| ||||||| || |||||| ||||||||||  |||||||| ||| | ||||  ||||||||||||||||||||    
T  18308270 aatactataaaatgtaactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaacatttttcttgattta 18308171  T
Q  298 gtaaccattttcaaatgttactcgattacaattatgt 334  Q
    ||||| |||||||||||||||| |||  |||||||||    
T  18308170 gtaacaattttcaaatgttactagatgtcaattatgt 18308134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 525 - 635
Target Start/End: Original strand, 4631347 - 4631458
Alignment:
Q  525 ttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaa-atgtcccacattg 623  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||  || | | ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  4631347 ttggaacactagttgaatttgaatggaagttggaagagtaaacacaaatctcgtcggaaagaactagtgttggtatgaattgaaaacatgtctcacattg 4631446  T
Q  624 gataggacatac 635  Q
     | |||||||||    
T  4631447 aaaaggacatac 4631458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 5911682 - 5911763
Alignment:
Q  238 ctttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |  |||||||| |||||||    
T  5911682 ctttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttact 5911763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 897535 - 897464
Alignment:
Q  240 ttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaa 311  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  897535 ttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaattttcaa 897464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 17113000 - 17112905
Alignment:
Q  245 taacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||||||||||||| |||||| |||||||| |||||  |||||||||||||||||||| |||||||| | ||||| |||| ||||||||| |||||    
T  17113000 taacaattgttcaagtgttacaaaatttaactagtactatttttcttgatttagtaacaattttcaattattactagatttcaattatgttgtagt 17112905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 15214410 - 15214328
Alignment:
Q  237 actttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||||  | |||||||| |||||||    
T  15214410 actttacccaacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttact 15214328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 37097371 - 37097439
Alignment:
Q  251 ttgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttact 37097439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 39368607 - 39368722
Alignment:
Q  188 tgttactgagaatactatgaaa-tgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacattt 286  Q
    ||||||||| |||||||| ||| ||| |||||| |||||||||| ||    |||| | ||||||||||  |||||| ||||| |||||||||||||||||    
T  39368607 tgttactgataatactataaaaatgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattagtaacattt 39368706  T
Q  287 ttcttgatttagtaac 302  Q
    ||||||||||||||||    
T  39368707 ttcttgatttagtaac 39368722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 648 - 724
Target Start/End: Complemental strand, 14724984 - 14724908
Alignment:
Q  648 agtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgctta 724  Q
    |||| |||||||||||||||||||||  ||| |||||||| |||||||||| |||||||  ||||||||||||||||    
T  14724984 agtgtttatataagtggggggtgacctacaaagatgtgccattggggtacccacttttgggaacgggtgagcgctta 14724908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 15204675 - 15204615
Alignment:
Q  239 tttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    ||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  15204675 tttacctaacaattgttcaagtgttactaaatttagttagcaacatttttcttgatttagt 15204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 13208709 - 13208620
Alignment:
Q  223 ctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaa 312  Q
    |||||||||||  |  ||||| ||||||| |||||| || ||||||||||||||||||||||||||||| ||||| | || |||||||||    
T  13208709 ctttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaattttcaaa 13208620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 1844033 - 1843981
Alignment:
Q  239 tttacataacaattgttcaaatgttactaaatttaattagtaacatttttctt 291  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  1844033 tttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 15193979 - 15193920
Alignment:
Q  260 tgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||| ||||||||||||||||||||||||||||||| ||  | |||||||| |||||||    
T  15193979 tgttaataaatttaattagtaacatttttcttgatttcgttgctattttcaagtgttact 15193920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 725
Target Start/End: Original strand, 26650563 - 26650620
Alignment:
Q  668 gtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttac 725  Q
    |||||| ||||||||||||| |||||||||| |||||||  ||||||||| |||||||    
T  26650563 gtgacctccaaggatgtgcccttggggtacccacttttgtgaacgggtgaacgcttac 26650620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 621
Target Start/End: Complemental strand, 19403386 - 19403286
Alignment:
Q  523 tgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattg--aaaaatgtcccaca 620  Q
    |||| ||||||||||||| | ||| || |||||| ||||||||| ||| || || | ||| ||||| ||||||||| | |||||  ||||||||||||||    
T  19403386 tgtttgaacactagttgaatttgactgaaagttgaaagagtaaatacaagttccattggatagaaccagtgttggtgtgaattgaaaaaaatgtcccaca 19403287  T
Q  621 t 621  Q
    |    
T  19403286 t 19403286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 26608519 - 26608659
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||  ||| || |||||||||||||  | |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  26608519 tactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttcttgatttcat 26608618  T
Q  300 aaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    ||| |||||||||||||||| |||  ||||||||| |||||    
T  26608619 aacaattttcaaatgttactagatgtcaattatgttgtagt 26608659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 30089857 - 30089723
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||  | |||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  30089857 aatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttcttgattta 30089758  T
Q  298 gtaaccattttcaaatgttactcgattacaattat 332  Q
    |||||  ||||||| ||||||| |||  |||||||    
T  30089757 gtaacagttttcaagtgttactagatgtcaattat 30089723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 9242462 - 9242580
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||  |||||||  |||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  9242462 aatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgattta 9242561  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  9242562 gttacaattttcaagtgtt 9242580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 20277320 - 20277459
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagt 279  Q
    ||||||| |||||| || ||||||||  ||||| ||| || ||||||||||||||   |||||| ||||||||||| ||||||||||||||||||||| |    
T  20277320 ttttttattgttacagataatactatataatgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaattaat 20277419  T
Q  280 aacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    || |||||| |||||||||| || |||||| | |||||||    
T  20277420 aatattttttttgatttagttacaattttcgagtgttact 20277459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 26621059 - 26621190
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| || |||||||||||||  |  ||||  ||||||||||| ||||||| ||||||||||| |||||||||||    
T  26621059 tgttacagataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttt 26621158  T
Q  288 tcttgatttagtaaccattttcaaatgttact 319  Q
    |||| |||||||||| |||||||| |||||||    
T  26621159 tcttaatttagtaacaattttcaagtgttact 26621190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 26619082 - 26619222
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| ||  |||||||||||| ||  ||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  26619082 aatactatcaaatgtaactaaagttctttagtaacataggatttaccta-caattgttcaaatgttaataaatttaatcagtaacatttttcttgattta 26619180  T
Q  298 gtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||| || |||||| ||||||| |||  ||||||||| |||||    
T  26619181 gtaa-caatttcaagtgttactagatgtcaattatgttgtagt 26619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 26224979 - 26225075
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgtta 317  Q
    |||||||||||||  | |||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||| |||||    
T  26224979 ctctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaattttcaagtgtta 26225075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 4685383 - 4685502
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | ||||||||| |  | |||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  4685383 tactataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagt 4685482  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  4685483 tacaattttcaagtgttact 4685502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 801 - 880
Target Start/End: Original strand, 24169538 - 24169617
Alignment:
Q  801 cttgggtaagaaagaaatatattttttatcatctgaaaatgttaaattattttttatcaagttaatcattacctggaagc 880  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||| ||| ||||    
T  24169538 cttgggtcaaaaagaaatatattttttatcatttgaaaatgttaaattaatttttattaatttaatcattatctgaaagc 24169617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 26205395 - 26205494
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||  ||| || |||||||||||||    |||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26205395 tactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagt 26205494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 222 - 319
Target Start/End: Complemental strand, 10022222 - 10022125
Alignment:
Q  222 tctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||| ||| |||||| |||||||||||||  |||||||||| ||||||||||||||||||  ||||||||| || |||||||| |||||||    
T  10022222 tctttagtaacacgag-ctttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctgatttagttacaattttcaattgttact 10022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 16086609 - 16086505
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaaca-gagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattt 296  Q
    |||||||| ||||||||||||| || || ||||||| ||| |||||| |||||||| ||||||||||| |||||||||||||||||| ||||  ||||||    
T  16086609 aatactataaaatgttactgaagctattaagtaacatgag-ctttacctaacaattattcaaatgttattaaatttaattagtaacagtttttctgattt 16086511  T
Q  297 agtaac 302  Q
    | ||||    
T  16086510 aataac 16086505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 3234477 - 3234328
Alignment:
Q  170 tatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaa-ttgttcaaatgttactaa 268  Q
    ||||| ||| ||||| | ||||||| | ||||| || ||||||||||||| || ||||||||||  |||||||| ||| || ||| ||||||||||||||    
T  3234477 tatacgacattttttgaatgttactaataatac-attaaatgttactgaagctatttagtaacacggactttacctaataaattggtcaaatgttactaa 3234379  T
Q  269 atttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||| | |||||| ||||||| || ||||||| ||  ||||||| |||||||    
T  3234378 attaatttagtaccatttttttttatttagttacatttttcaactgttact 3234328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 544 - 729
Target Start/End: Original strand, 7874379 - 7874562
Alignment:
Q  544 tgagtggaagttggaa-gagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacattggataggacatacataccca 642  Q
    |||||||||||||||| || ||  ||||||||||||| |||| ||||||||||||||| |||  |||||||||||||||||| |||     |||| |||     
T  7874379 tgagtggaagttggaaagaatatgcacatgtcccttaagaaaaaactagtgttggtatgaataaaaaaatgtcccacattgggtag-----acatgccct 7874473  T
Q  643 ctagca-gtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaac--ttttgcaaacgggtgagcgcttacgaaa 729  Q
    |||| | | | |||||||||| |||||||||| |||||  ||||||  ||  ||||| ||  |||||| |||||||||||||||||||||    
T  7874474 ctagtacgagtttatataagt-gggggtgacctccaagagtgtgcccctgatgtacccacttttttgcgaacgggtgagcgcttacgaaa 7874562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 3374374 - 3374320
Alignment:
Q  247 acaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaa 301  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||    
T  3374374 acaattgttcaaatgttacttaatttaatcaataacatttttcttgatttggtaa 3374320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 16170365 - 16170275
Alignment:
Q  226 tagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgtt 316  Q
    ||||||||  || ||||| ||||||||||| || |||||||||||||||||||||||| ||||  |||||| || || |||||||| ||||    
T  16170365 tagtaacattgattttacctaacaattgtttaagtgttactaaatttaattagtaacactttttgtgatttggttacaattttcaagtgtt 16170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 27136039 - 27135958
Alignment:
Q  210 tgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttctt 291  Q
    |||||| ||| ||||||||||||| || |||||  |||||||||||||||||||| || || |||| | |||||||||||||    
T  27136039 tgttaccgaaactctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttttctt 27135958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 725
Target Start/End: Complemental strand, 7357991 - 7357934
Alignment:
Q  668 gtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttac 725  Q
    |||||| ||||||||||||| ||| |||||| |||||||  ||||||||| |||||||    
T  7357991 gtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaacgcttac 7357934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 7e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 5528883 - 5528744
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagt 279  Q
    ||||| |||||||| || |||||| | |||||| ||| || ||||||||||||| ||||||||  |||||||||||  | |||| |||||||||||||||    
T  5528883 tttttaactgttacagataatactgtaaaatgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagt 5528784  T
Q  280 aacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||| || |||||||| |||||||    
T  5528783 aacatttttcttgatttagttacaattttcaagtgttact 5528744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 6801790 - 6801929
Alignment:
Q  180 ttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagt 279  Q
    ||||||| |||||| |  |||||| | |||||| ||| || |||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||    
T  6801790 ttttttaatgttacagctaatactctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagt 6801889  T
Q  280 aacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||||||| ||||||||||||   ||||||| |||||||    
T  6801890 aacatttttattgatttagtaatagttttcaagtgttact 6801929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 160 - 319
Target Start/End: Complemental strand, 6403752 - 6403594
Alignment:
Q  160 aaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaa 259  Q
    ||||||| ||||| ||||| ||||||||||||||  |  ||  ||| ||||||||||||| || |||| |||||  | |||||| ||||||||| |||||    
T  6403752 aaaatataaatatgcaacatttttttactgttaca-attatgatataaaatgttactgaagctttttaataacacgggctttacctaacaattgctcaaa 6403654  T
Q  260 tgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||||||||||||| ||||||| || | |||||| |||||||    
T  6403653 tgttactaaatttaattagtaacatttttcttaatttagttacaaatttcaattgttact 6403594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 17634451 - 17634570
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| ||  ||||||||||||  | |||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  17634451 tactataaaatgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagt 17634550  T
Q  300 aaccattttcaaatgttact 319  Q
     || ||||||||||||||||    
T  17634551 tacaattttcaaatgttact 17634570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 28249055 - 28249174
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  28249055 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 28249154  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  28249155 tacaattttcaagtgttact 28249174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 45356092 - 45356210
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  45356092 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 45356191  T
Q  300 aaccattttcaaatgttac 318  Q
     || |||||||| ||||||    
T  45356192 tacaattttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 19369878 - 19370006
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| || |||||||||||||  |||||||  |||||||||||| | |||| | |||||||||||||||||||||    
T  19369878 tgttacagataatactataaaatgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttt 19369977  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||||| || |||||||| ||||    
T  19369978 tcttgatttagttacaattttcaagtgtt 19370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 25638927 - 25638808
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  |  ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  25638927 tactataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 25638828  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  25638827 tacaattttcaagtgttact 25638808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 148 - 319
Target Start/End: Complemental strand, 31347520 - 31347350
Alignment:
Q  148 aaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataa 247  Q
    ||||||||||||||| ||| |||||  |||| ||||||| ||||||  | |||  ||| |||||||||||||  |  ||||||||| ||  ||||  |||    
T  31347520 aaaagtgttacaaaa-tataaatatgtaacatttttttattgttacaaataatgatataaaatgttactgaagatggttagtaacacaggatttatctaa 31347422  T
Q  248 caattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||    
T  31347421 caattgatcaaatgttactaaatttaattagtagcatttttcttgatttggttacaattttcaattgttact 31347350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 19448580 - 19448452
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||| | ||| || |||||||||||||  |||||||  |||||||||||| | |||| | |||||||||||||||||||||    
T  19448580 tgttacagataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttt 19448481  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||||| || |||||||| ||||    
T  19448480 tcttgatttagttacaattttcaagtgtt 19448452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 19532496 - 19532624
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||| | ||| || |||||||||||||  |||||||  |||||||||||| | |||| | |||||||||||||||||||||    
T  19532496 tgttacagataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttt 19532595  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||||| || |||||||| ||||    
T  19532596 tcttgatttagttacaattttcaagtgtt 19532624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 29345527 - 29345432
Alignment:
Q  224 tttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||| || | |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||| | |||||||    
T  29345527 tttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaattttcgagtgttact 29345432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 25637766 - 25637645
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| ||  ||||||||||||  | |||||| |||||||||||| | |||| ||||||||||||||||||| ||||||| |||||    
T  25637766 aatactataaaatgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaattta 25637667  T
Q  298 gtaaccattttcaaatgttact 319  Q
    || || |||||||| |||||||    
T  25637666 gttacaattttcaagtgttact 25637645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 5650964 - 5651044
Alignment:
Q  239 tttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||   ||||||| |||||||    
T  5650964 tttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttgatttagtaatagttttcaagtgttact 5651044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 31369088 - 31369203
Alignment:
Q  202 ctatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaa 301  Q
    |||| |||||| |||||| ||||||||||||| |  |||||||||||| ||||| |||||| |||||| |||||||||||||||| || |||||||||      
T  31369088 ctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttatcgtgatttagttt 31369187  T
Q  302 ccattttcaaatgtta 317  Q
    |  |||||||||||||    
T  31369188 catttttcaaatgtta 31369203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 29553704 - 29553630
Alignment:
Q  245 taacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||| || || |||||||| |||||||    
T  29553704 taacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttact 29553630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 5000811 - 5000665
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||||| |||||||| |  | |||||  | ||||||||||||| ||  || || |||| |||| ||||||||||||||||||||||||||||| |||    
T  5000811 tgttactgataatactataacgtcttactctagctctttagtaacacaggtttcacctaactattgctcaaatgttactaaatttaattagtaacaattt 5000712  T
Q  288 tcttgatttagtaaccattttcaaatgttactcgattacaattatgt 334  Q
    |  |||| ||||||| |||||||| ||| ||| |||  |||||||||    
T  5000711 tgatgatgtagtaacaattttcaattgtaactagatctcaattatgt 5000665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 18767039 - 18766921
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||   ||||||| |||||||||||  | |||| | ||||||||||| ||| |||||||||||||||    
T  18767039 aatactataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgattta 18766940  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  18766939 gttacaattttcaagtgtt 18766921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 14997743 - 14997601
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| ||| || ||| || |||||||||||||  |  ||||| |||||||| | ||||||||||||| |||||  ||||||||||||||||| |||    
T  14997743 aatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttcttgaatta 14997644  T
Q  298 gtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    ||||  |||||||| ||| ||| |||  |||| |||| |||||    
T  14997643 gtaataattttcaagtgtcactagatgtcaatcatgttgtagt 14997601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 6223500 - 6223434
Alignment:
Q  221 ctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||||||||||    |||||| |||||||| | |||||||||||||||||||| |||||| ||||    
T  6223500 ctctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 4881072 - 4881189
Alignment:
Q  223 ctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcga 322  Q
    |||||||||||  |||||||| |||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||    
T  4881072 ctttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttactgga 4881171  T
Q  323 ttacaattatgtagtagt 340  Q
    |  ||||||||| |||||    
T  4881172 tgtcaattatgttgtagt 4881189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 24558963 - 24559074
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    ||||||||| |||||||| |||| | ||| ||  |||||||||||| || | |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  24558963 tgttactgataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaatgttactaaatttaattagtaacatttt 24559062  T
Q  288 tcttgatttagt 299  Q
    ||||||||||||    
T  24559063 tcttgatttagt 24559074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 47066014 - 47066133
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || |||||| ||||||  | |||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  47066014 tactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagt 47066113  T
Q  300 aaccattttcaaatgttact 319  Q
     || |||||||| |||||||    
T  47066114 tacaattttcaagtgttact 47066133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 43600387 - 43600269
Alignment:
Q  200 tactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 299  Q
    |||||| |||||| ||| || | |||||||||||  | |||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||    
T  43600387 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagt 43600288  T
Q  300 aaccattttcaaatgttac 318  Q
     || |||||||| ||||||    
T  43600287 tacaattttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 1684920 - 1685048
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| || ||| ||| || |||||||||||||  |||||||  |||||||||||| | |||| | |||||||||||||||||||||    
T  1684920 tgttacagataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttt 1685019  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||||||||||| || |||||||| ||||    
T  1685020 tcttgatttagttacaattttcaagtgtt 1685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 3267940 - 3267834
Alignment:
Q  529 aacactagttgagtatgagtggaagttggaa-gagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaatgtcccacattggata 627  Q
    |||||||||||| | |||||||||||||||| || ||||| ||| | ||||||||||||||||||||||| || ||||||||||| ||| |||||| |||    
T  3267940 aacactagttgaatttgagtggaagttggaaagaataaacgcatattccttaggaaagaactagtgttggcatgaattgaaaaatatcctacattgaata 3267841  T
Q  628 ggacata 634  Q
    |||||||    
T  3267840 ggacata 3267834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 48464115 - 48464049
Alignment:
Q  245 taacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  48464115 taacaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaattttcaa 48464049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 4904158 - 4904239
Alignment:
Q  238 ctttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||    
T  4904158 ctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaatttttaagtgttact 4904239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 528 - 672
Target Start/End: Complemental strand, 29086179 - 29086038
Alignment:
Q  528 gaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaattgaaaaa-tgtcccacattggat 626  Q
    ||||||||||||| | ||||||||||||||||||||||||||| |||||   ||| ||||||||||||||| | |||||||||| || ||||||| |||     
T  29086179 gaacactagttgaatttgagtggaagttggaagagtaaacacaagtcccaatggatagaactagtgttggtgtgaattgaaaaaatgccccacataggag 29086080  T
Q  627 aggacatacatacccactagcagtgcttatataagtggggggtgac 672  Q
    |||||| ||     |||||| |||| ||||| ||||||||||||||    
T  29086079 aggacacact----cactagtagtgtttataaaagtggggggtgac 29086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 53300464 - 53300352
Alignment:
Q  207 aaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccatt 306  Q
    |||||| ||| || |||||| ||||||  | |||||| ||||||||||| |  |||||||||||||||||| ||||||||||||||||||| | || |||    
T  53300464 aaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgatttaattacaatt 53300365  T
Q  307 ttcaaatgttact 319  Q
    ||||| |||||||    
T  53300364 ttcaagtgttact 53300352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 37750968 - 37751109
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || ||  |||||||||  | |||||  |||||||||  ||||||||||| | ||||||||||||||||||| ||||||||    
T  37750968 aatactataaaatgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt-ttgattta 37751066  T
Q  298 gtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    || || ||||||| |||||||| |||  ||||||||| |||||    
T  37751067 gtgacaattttcatatgttactggatgtcaattatgttgtagt 37751109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 21539250 - 21539350
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||  |||||| ||| || |||||||||||||  |||||  | ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  21539250 aatactaaaaaatgtaactaaatctctttagtaacaaggacttatc-taacaattgtttaaatgttactaaatttaatcagtaacattttccttgattta 21539348  T
Q  298 gt 299  Q
    ||    
T  21539349 gt 21539350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 1152176 - 1152048
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||| ||| || ||| ||| || |||||||||||||  |||||||  |||||||||||  | |||| | |||||||||||||||||||||    
T  1152176 tgttacagataatattataaactgtaactaaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttt 1152077  T
Q  288 tcttgatttagtaaccattttcaaatgtt 316  Q
    |||| ||||||| || |||||||| ||||    
T  1152076 tcttaatttagttacaattttcaagtgtt 1152048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 593 - 729
Target Start/End: Complemental strand, 3267826 - 3267694
Alignment:
Q  593 gttggtatcaattgaaaaatgtcccacattggataggacatacatacccactagcagtgcttatataagtggggggtgaccgccaaggatgtgcctttgg 692  Q
    ||||| || ||||||||||| ||| ||||||||||||||||||    ||||||| |||| ||||||||||||||||||| | |||||| | |||| ||||    
T  3267826 gttggcatgaattgaaaaatatcctacattggataggacatac----ccactagtagtgtttatataagtggggggtgatctccaagggtatgcccttgg 3267731  T
Q  693 ggtaccaacttttgcaaacgggtgagcgcttacgaaa 729  Q
     ||| | | |||| |||| || |||||||| ||||||    
T  3267730 cgtatccatttttacaaatggatgagcgctcacgaaa 3267694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 523 - 632
Target Start/End: Original strand, 17682218 - 17682328
Alignment:
Q  523 tgttggaacactagttgagtatgagtggaagttggaagagtaaacacatgtcccttaggaaagaactagtgttggtatcaatt-gaaaaatgtcccacat 621  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||| ||||  | ||| ||||||||||||||| | ||||  |||||| ||||||||    
T  17682218 tgttggaacgctagttgaatttaagtggaagttggaagagtaaacacaagtcctattggatagaactagtgttggtgtgaattaaaaaaatatcccacat 17682317  T
Q  622 tggataggaca 632  Q
     ||| ||||||    
T  17682318 aggaaaggaca 17682328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 48465545 - 48465443
Alignment:
Q  148 aaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataa 247  Q
    ||||||||| ||||||||| |||||  ||| |||||| | ||||||||| |||||||| ||||||||||||| || |||||||||| | | ||||| |||    
T  48465545 aaaagtgttgcaaaaatataaatatgtaactgtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacaaattttacctaa 48465446  T
Q  248 caa 250  Q
    |||    
T  48465445 caa 48465443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 26075290 - 26075364
Alignment:
Q  260 tgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgt 334  Q
    |||||||||||||| ||||||||  |||||||||| ||||||| |||||||| ||||| | |||| |||||||||    
T  26075290 tgttactaaatttacttagtaaccattttcttgatctagtaacaattttcaattgttattagatttcaattatgt 26075364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 26075221 - 26075285
Alignment:
Q  244 ataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccatttt 308  Q
    ||||||||||||| |||||||| ||||||| ||||||||| |||||||||| || |||| |||||    
T  26075221 ataacaattgttcgaatgttacaaaatttacttagtaacaattttcttgatctaataacaatttt 26075285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 21317560 - 21317485
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||| || |||||||| |||| |  |||||||||| || |||||| ||||||||||| |||||||||||||||||    
T  21317560 aatacaataaaatgttagtgaagcattttagtaacacagcctttacctaacaattgttgaaatgttactaaattta 21317485  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 4923690 - 4923753
Alignment:
Q  277 agtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgtagtagt 340  Q
    |||||||||||||||||||||||||| ||||| || ||||||| |||   |||||||| |||||    
T  4923690 agtaacatttttcttgatttagtaacaatttttaagtgttactggatgttaattatgttgtagt 4923753  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 45641723 - 45641677
Alignment:
Q  248 caattgttcaaatgttactaaatttaattagtaacatttttcttgat 294  Q
    ||||||| |||||||||||| || |||||||||||||||||| ||||    
T  45641723 caattgtgcaaatgttactagatataattagtaacatttttcatgat 45641677  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 18941676 - 18941733
Alignment:
Q  238 ctttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgatt 295  Q
    |||||| |||||||||||||||||||| |  || ||||||| |||||||||| |||||    
T  18941676 ctttacttaacaattgttcaaatgttattggatataattagcaacatttttcgtgatt 18941733  T

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Target: scaffold0576 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 6845 - 6700
Alignment:
Q  174 caacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaattta 273  Q
    ||||| ||||| | |||||| || | |||||| |||||| ||| || |  ||||||||||  | |||||| |||||||||||||| |||| |||||||||    
T  6845 caacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaattta 6746  T
Q  274 attagtaacatttttcttgatttagtaaccattttcaaatgttact 319  Q
    |||||||||||||||||||||||||| || ||||| || |||||||    
T  6745 attagtaacatttttcttgatttagttacaatttttaagtgttact 6700  T

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Target: scaffold0069 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 40666 - 40789
Alignment:
Q  188 tgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttt 287  Q
    |||||| || |||||||| |||||| ||| || |||||||||||||  |||||||  |||||||||||| | |||| | ||||||||||||||||| |||    
T  40666 tgttacagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattt 40765  T
Q  288 tcttgatttagtaaccattttcaa 311  Q
    |||||||||||| || ||||||||    
T  40766 tcttgatttagttacaattttcaa 40789  T

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Target: scaffold0684 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 725 - 843
Alignment:
Q  198 aatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 297  Q
    |||||||| |||||| ||| || |||||||||||||  |||||||  |||||||||||| | |||| | ||||||||||||||||| |||||||||||||    
T  725 aatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgattta 824  T
Q  298 gtaaccattttcaaatgtt 316  Q
    || || |||||||| ||||    
T  825 gttacaattttcaagtgtt 843  T

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Target: scaffold0002 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 446238 - 446397
Alignment:
Q  175 aacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacataacaattgttcaaatgttactaaatttaa 274  Q
    |||| ||||||| |||||||   | |||||| || ||||||| || ||||||||||| |  |||||| | ||||||||||||||||||||| ||||||||    
T  446238 aacatttttttaatgttactactactactataaagtgttactaaagctctttagtaatatggacttttcctaacaattgttcaaatgttaccaaatttaa 446337  T
Q  275 ttagtaacatttttcttgatttagtaaccattttcaaatgttactcgattacaattatgt 334  Q
    || |||||| |||   ||||||||| || || ||| | ||||||| |||  |||||||||    
T  446338 ttggtaacaatttgtatgatttagttacaatcttcgattgttactagatctcaattatgt 446397  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 648 - 724
Target Start/End: Original strand, 33415 - 33491
Alignment:
Q  648 agtgcttatataagtggggggtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgctta 724  Q
    |||| ||||||||| | ||||||| | |||||| |||||| ||||| |||| |||||||  ||||||||||||||||    
T  33415 agtgtttatataagagtggggtgagctccaagggtgtgccattgggatacccacttttgtgaacgggtgagcgctta 33491  T

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