View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4492-Insertion-5 (Length: 814)

Name: NF4492-Insertion-5
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4492-Insertion-5
NF4492-Insertion-5
[»] chr1 (10 HSPs)
chr1 (472-814)||(10481308-10481650)
chr1 (566-797)||(10545417-10545648)
chr1 (574-780)||(10485708-10485914)
chr1 (574-813)||(10500127-10500366)
chr1 (8-70)||(10481893-10481955)
chr1 (574-695)||(10503271-10503392)
chr1 (355-415)||(10481732-10481792)
chr1 (577-695)||(10508829-10508947)
chr1 (137-174)||(1091220-1091257)
chr1 (137-174)||(17669686-17669723)
[»] chr8 (3 HSPs)
chr8 (137-173)||(39138981-39139017)
chr8 (137-174)||(6109210-6109247)
chr8 (137-170)||(33996114-33996147)
[»] chr5 (4 HSPs)
chr5 (137-173)||(37054252-37054288)
chr5 (145-174)||(27903154-27903183)
chr5 (137-174)||(35493956-35493993)
chr5 (137-174)||(40810612-40810649)
[»] chr2 (1 HSPs)
chr2 (144-174)||(18290693-18290723)
[»] chr6 (1 HSPs)
chr6 (137-174)||(29680629-29680666)
[»] chr4 (3 HSPs)
chr4 (137-170)||(19997347-19997380)
chr4 (137-174)||(20525560-20525597)
chr4 (137-174)||(34969376-34969413)
[»] chr3 (1 HSPs)
chr3 (137-170)||(48022297-48022330)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 472 - 814
Target Start/End: Complemental strand, 10481650 - 10481308
Alignment:
Q  472 attcctagaaaactattatttttctcaaaataaaatgtaacatatggactcataatttgactcaccatannnnnnngggtcgttataaagggaatattta 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||| ||||||||||||||| |||    
T  10481650 attcctagaaaactattatttttctcaaaataaaatgtaacatatgtactcataatttgactcaccatatttttttgggttgttataaagggaatactta 10481551  T
Q  572 acagagtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtgctactt 671  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||  | ||||||||||| |||||||    
T  10481550 acagagtagatatctacatatgtgattgcagccaaaggaagatcatcacgaagtttaaccactgcttccttcaactttaggttgaaatattgcgctactt 10481451  T
Q  672 cattatattgctttgcacaaccattttcatccttttcagctaatggaaaattcacaagaatataagggaggcagccaatgggtcctgtgttgtgtatcca 771  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  10481450 cattatattgctttgcacaaccattttcatccttttcagctaatggaaaattcaccaaaatataagggaggcagccaatgggtcctgtgttgtgtatcca 10481351  T
Q  772 aaatgatctaccacccaaattgtatatgtcctgaatcaccaag 814  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10481350 aaatgatctaccacccaaattgtatatgtcctgaatcaccaag 10481308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 566 - 797
Target Start/End: Original strand, 10545417 - 10545648
Alignment:
Q  566 tatttaacagagtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtg 665  Q
    ||||| || ||||||||||||||||||||||||||||||  |||||| || |||||||||||  |||  ||||||||||||||  | || |||| ||| |    
T  10545417 tatttgactgagtagatatctacatatgtgattgcagcttgaggaagttcctcacgaagttggtccaaagcttccttcaactttaggttaaaatgttgag 10545516  T
Q  666 ctacttcattatattgctttgcacaaccattttcatccttttcagctaatggaaaattcacaagaatataagggaggcagccaatgggtcctgtgttgtg 765  Q
    |||||||||||||||||||||||||||||| || |||| ||||||| |||  ||| ||||    ||||||||| || || ||||||||||||||||||||    
T  10545517 ctacttcattatattgctttgcacaaccatattgatccctttcagcaaatataaatttcaaggaaatataaggaagacaaccaatgggtcctgtgttgtg 10545616  T
Q  766 tatccaaaatgatctaccacccaaattgtata 797  Q
    |||||||||||||||| | |||||||||||||    
T  10545617 tatccaaaatgatctagcccccaaattgtata 10545648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 574 - 780
Target Start/End: Complemental strand, 10485914 - 10485708
Alignment:
Q  574 agagtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtgctacttca 673  Q
    |||||||| ||| ||||||||||||||||| | |||||||||  ||||||||||| | | |||||||||||||||   |||||||||||| | |||||||    
T  10485914 agagtagacatcaacatatgtgattgcagcaagaggaagatcgacacgaagttgagctaatgcttccttcaactttaaattgaaatattgagatacttca 10485815  T
Q  674 ttatattgctttgcacaaccattttcatccttttcagctaatggaaaattcacaagaatataagggaggcagccaatgggtcctgtgttgtgtatccaaa 773  Q
    || |||||||||||||||||||    |||||||  |||| ||||||||||  | | |||  |||| || || ||||| || |||||||||||||||||||    
T  10485814 ttgtattgctttgcacaaccatagctatcctttatagctgatggaaaattagccaaaattaaaggaagacaaccaattggccctgtgttgtgtatccaaa 10485715  T
Q  774 atgatct 780  Q
    |||||||    
T  10485714 atgatct 10485708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 574 - 813
Target Start/End: Complemental strand, 10500366 - 10500127
Alignment:
Q  574 agagtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtgctacttca 673  Q
    |||||||||||| |||||||| ||||||||||  |||||||| |  ||||||||| | |  ||||||||||||||   |||||||||||| | |||||||    
T  10500366 agagtagatatcaacatatgttattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattgaaatattgagatacttca 10500267  T
Q  674 ttatattgctttgcacaaccattttcatccttttcagctaatggaaaattcacaagaatataagggaggcagccaatgggtcctgtgttgtgtatccaaa 773  Q
    || ||||||||||||||||||| |  |||||||  |||| ||||||||||  | | |||  |||| |  || ||||| ||||| ||||||||||||||||    
T  10500266 ttgtattgctttgcacaaccatatctatcctttatagctgatggaaaattagccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaa 10500167  T
Q  774 atgatctaccacccaaattgtatatgtcctgaatcaccaa 813  Q
    |||| ||  | || ||||||||||||| ||  ||||||||    
T  10500166 atgacctggctcctaaattgtatatgttctagatcaccaa 10500127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 10481955 - 10481893
Alignment:
Q  8 tctcctccatagccacaacaagcaattaggggatgctcaaatcctgcatatcaatgaataact 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10481955 tctcctccatagccacaacaagcaattaggggatgctcaaatcctgcatatcaatgaataact 10481893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 574 - 695
Target Start/End: Complemental strand, 10503392 - 10503271
Alignment:
Q  574 agagtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtgctacttca 673  Q
    |||||||||||| |||||||| |||||||| | |||||||||  ||||||||||| | | ||||| |||||||||   ||| |||||||| | |||||||    
T  10503392 agagtagatatcaacatatgttattgcagcaagaggaagatcgacacgaagttgagctaatgctttcttcaactttaaattaaaatattgagatacttca 10503293  T
Q  674 ttatattgctttgcacaaccat 695  Q
    || |||||||||||||||||||    
T  10503292 ttgtattgctttgcacaaccat 10503271  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 10481792 - 10481732
Alignment:
Q  355 tttaatagaagctgcttaaaataaccttttatttgaaacaatatttagattatttgaaaca 415  Q
    ||||||||||||| ||||||| | |||||||||||||||| | ||||||||||||||||||    
T  10481792 tttaatagaagctacttaaaacagccttttatttgaaacagtttttagattatttgaaaca 10481732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 695
Target Start/End: Complemental strand, 10508947 - 10508829
Alignment:
Q  577 gtagatatctacatatgtgattgcagctaaaggaagatcatcacgaagttgacccactgcttccttcaacttatgattgaaatattgtgctacttcatta 676  Q
    ||||||||| |||||||||||||||||  ||| |||||    |||||||| | | |  |||||||||||||||  ||| |||||||| | |||||||||     
T  10508947 gtagatatcaacatatgtgattgcagcagaagaaagattgctacgaagttcagctagggcttccttcaacttaaaattaaaatattgagatacttcattg 10508848  T
Q  677 tattgctttgcacaaccat 695  Q
    |||||||||||||| ||||    
T  10508847 tattgctttgcacagccat 10508829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 1091257 - 1091220
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  1091257 tttttttgtggtggtcagagtttgaaccccgaaccttg 1091220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 17669723 - 17669686
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  17669723 tttttttgtggtggccggagtttgaaccccgaaccttg 17669686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 39138981 - 39139017
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaacctt 173  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39138981 tttttttgtggtggtcggagtttgaaccccgaacctt 39139017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 6109247 - 6109210
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  6109247 ttttgttgtggtggccggagtttgaaccacgaaccttg 6109210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 33996147 - 33996114
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaac 170  Q
    |||| |||||||||||||||||||||||||||||    
T  33996147 tttttttgtggtggtcggagtttgaaccccgaac 33996114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 37054252 - 37054288
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaacctt 173  Q
    |||| ||||||||||||||||||||||||||||||||    
T  37054252 tttttttgtggtggtcggagtttgaaccccgaacctt 37054288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 27903183 - 27903154
Alignment:
Q  145 tggtggtcggagtttgaaccccgaaccttg 174  Q
    ||||||||||||||||||||||||||||||    
T  27903183 tggtggtcggagtttgaaccccgaaccttg 27903154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 35493956 - 35493993
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  35493956 tttttttgtggtggtcggagtttgaatcccgaaccttg 35493993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 40810649 - 40810612
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  40810649 tttttttgtggtggtcggagtttgaaccccggaccttg 40810612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 18290723 - 18290693
Alignment:
Q  144 gtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||||||||||||||||||||||||||||||    
T  18290723 gtggtggtcggagtttgaaccccgaaccttg 18290693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 29680666 - 29680629
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  29680666 tttttttgtggtggtcggagtttgaacaccgaaccttg 29680629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 19997347 - 19997380
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaac 170  Q
    |||| |||||||||||||||||||||||||||||    
T  19997347 tttttttgtggtggtcggagtttgaaccccgaac 19997380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 20525560 - 20525597
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  20525560 tttttttgtggtggtcggagtttgaaccccgaatcttg 20525597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 34969376 - 34969413
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaaccttg 174  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  34969376 tttttttgtggtggtcggagtttgaaccctgaaccttg 34969413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 48022297 - 48022330
Alignment:
Q  137 ttttgttgtggtggtcggagtttgaaccccgaac 170  Q
    |||| |||||||||||||||||||||||||||||    
T  48022297 tttttttgtggtggtcggagtttgaaccccgaac 48022330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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