View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4492-Insertion-6 (Length: 650)
Name: NF4492-Insertion-6
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492-Insertion-6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 43655121 - 43655632
Alignment:
| Q |
7 |
attaatttggaagataatgcactacataactatttctttatggtgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43655121 |
attaatttggaagataatgcactacataactatttctttatggtgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaag |
43655220 |
T |
|
| Q |
107 |
gcaatcagtctttacttagttgagcaaggagatgagatatgtcttcagcttgcttgaatatcttttatgaagctaattttttatttacataagaagaaga |
206 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43655221 |
gcaatcaatatttacttagttgagcaaggagatgaggtatgtcttcagcttgcttgaatatcttttatgaagctaaatttttatttacataagaagaaga |
43655320 |
T |
|
| Q |
207 |
cctttatattaatatgtaaggtataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43655321 |
cctttatattaatatgtaaggtataagacaatcaagtttgatttgtggtctaagataataaggatgtgtgatagtataatacactacacaagaatattgt |
43655420 |
T |
|
| Q |
307 |
tttgaaaagcttcttatgaagtttgtattctgaaaagcgagatgagtatcccttatgatcaatactacttggaaaaaagaattgatgtttaattcacttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43655421 |
tttgaaaagcttcttatgaagtttgtattctgaaaagcgagatgagtatcccttatgatcaatactacttggaaaaaagaattgatgtttaattcacttg |
43655520 |
T |
|
| Q |
407 |
tgacaatttaattgaaatccatatatccttaaatatttatacacatatgtgcatttgtatagattttaaatttgatgcgtacaat-aaatttgttctctt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
43655521 |
tgacaatttaattgaaatccatatatccttaaacatttatacacatatgtgcatttgtatagattttaaatttgatgcgtacaataaaatttgttctctt |
43655620 |
T |
|
| Q |
506 |
tttaattgttat |
517 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43655621 |
tttaattgttat |
43655632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 510 - 650
Target Start/End: Original strand, 43655672 - 43655816
Alignment:
| Q |
510 |
attgttattatcattattgacattaaatagaaacatgattatcacaatttctaactatgacgttacaagcaattgccatgtaaagttgtgtcttcctgcc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
43655672 |
attgttattatcattattgacattaaatagaaacatgattatcacaatttctaactatgacgttgcaagcaattgccatgtaaagttgtgtcttcctgcc |
43655771 |
T |
|
| Q |
610 |
tgt----tatgattgaacaacatgaactttaaattttgttccaat |
650 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43655772 |
tgttatatatgattgaacaacatgaactttaaattttgttccaat |
43655816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 8364082 - 8364494
Alignment:
| Q |
7 |
attaatttggaagataatgcactacataactatttctttatggtgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaag |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||| |
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|
| T |
8364082 |
attaattcggaagataatgcactacataactatttctttatggtgtgaagtttgtatactatgataaagatttaccatactatttagtgggcatggaaag |
8364181 |
T |
|
| Q |
107 |
gcaatcagtctttacttagttgagcaaggagatgagatatgtcttcagcttgcttgaatatcttttatgaagctaattttttatttacataagaagaaga |
206 |
Q |
| |
|
|||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
8364182 |
gcaagcagcctttacttagcttagcaaggagatgaggtatgtcttcagcttgcttgaatatctcttatgaagctaattttttatttacataagaagaaga |
8364281 |
T |
|
| Q |
207 |
cctttatattaatatgtaaggtataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgt |
306 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8364282 |
cctttatattaatgtgtaaggtataagataatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataattcactacacaagaatattgt |
8364381 |
T |
|
| Q |
307 |
tttgaaaagcttcttatgaagtttgtattctgaaaagcgagatgagtatcccttatgatcaatactacttg-gaaaaaagaattgatgtttaattcactt |
405 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| |||| |
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|
| T |
8364382 |
tttgaaaaggttcttatgaagtttgtattctgaaaagagagttgagtgtcccttatgatcaatgctacttgaaaaaaaaaaattgatgtttaattaactt |
8364481 |
T |
|
| Q |
406 |
gtgacaatttaat |
418 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8364482 |
gcgacaatttaat |
8364494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 510 - 650
Target Start/End: Original strand, 8364663 - 8364803
Alignment:
| Q |
510 |
attgttattatcattattgacattaaatagaaacatgattatcacaatttctaactatgacgttacaagcaattgccatgtaaagttgtgtcttcctgcc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
8364663 |
attgttattatcattattgacattaaatagaaacatgattatcacaatttctaactatgacgttgcaagcaattgccatgtaaagttgtgtcttcctgtc |
8364762 |
T |
|
| Q |
610 |
tgttatgattgaacaacatgaactttaaattttgttccaat |
650 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
8364763 |
tgttatgattgaacaacatgaactttaaaatttgctccaat |
8364803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 8364509 - 8364623
Alignment:
| Q |
402 |
acttgtgacaatttaattgaaatccatatatccttaaatatttatacacatatgtgcatttgtatagattttaaatttgatgcgtacaataaatttgttc |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8364509 |
acttgtgacaatttaattgcaatccatatatccttaaacatttatagacatatgtgcatttgtatagattttaaatttgatgcctacaataaatttgtt- |
8364607 |
T |
|
| Q |
502 |
tctttttaattgttat |
517 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
8364608 |
tttttttaattgttat |
8364623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 7 - 439
Target Start/End: Complemental strand, 32404490 - 32404051
Alignment:
| Q |
7 |
attaatttggaagataatgcactacataactatttctttatggtgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaag |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
32404490 |
attaattcagaagataatgcactacataactatttctttatggtgtgaagtttgtata-tatgataaagatttaccatactatttagtggccatggaaag |
32404392 |
T |
|
| Q |
107 |
gcaatcagtctttacttagttgagcaaggagatgagatatgtcttcagcttgcttgaatatcttttatgaagctaattttttatttacataagaagaaga |
206 |
Q |
| |
|
|||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32404391 |
gcaagcagcctttacttagcttagcaaggagatgaggtatgtcttcagcttgcttgaatatctcttatgaagctaattttttatttacataagaagaaga |
32404292 |
T |
|
| Q |
207 |
cctttatattaatatgtaaggtataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgt |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32404291 |
cctttatattaatgtgtaaggtataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataattcactacacaagaatattgt |
32404192 |
T |
|
| Q |
307 |
tttgaaaagcttcttatgaagtttgtattctgaaaagcgagatgagtatcccttatgatcaatactacttggaaaaaagaa--------ttgatgtttaa |
398 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||| |||||| || ||||||||||| |
|
|
| T |
32404191 |
tttgaaaaggttcttatgaagtttgtattctcaaaagagagttgagtatcccttatgatcaaggctacttgaaaaaaaaaaaaaaaaacttgatgtttaa |
32404092 |
T |
|
| Q |
399 |
ttcacttgtgacaatttaattgaaatccatatatccttaaa |
439 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32404091 |
ttaacttgtgacaatttaattgaaatccatatatccgtaaa |
32404051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 8586418 - 8586496
Alignment:
| Q |
228 |
tataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgtt |
307 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
8586418 |
tataagataatcaagtgtgatttgtggtctaagattatagggatgtgtgatagtataatactat-cacaagaatattgtt |
8586496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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