View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4492-Insertion-7 (Length: 442)

Name: NF4492-Insertion-7
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4492-Insertion-7
NF4492-Insertion-7
[»] chr2 (2 HSPs)
chr2 (123-442)||(5617890-5618207)
chr2 (8-165)||(5618195-5618352)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 123 - 442
Target Start/End: Complemental strand, 5618207 - 5617890
Alignment:
Q  123 tatgaatgtcaaaagtattttcttagggaatatgaatgtcaaaagtaatatcataagaaaagttaggaattaataaaagtatttgaatttttccaatcct 222  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5618207 tatgaatgtcaaaggtattttcttagggaatatgaatgtcaaaagtaatatcataagaaaagttaggaattaataaaagtatttgaatttttccaatcct 5618108  T
Q  223 cataagaaaagttaggaatttaacacgtttttcacctaattttttaaataccttcaaaaaattcaacgcacctttaaacattaagtaggcaaagttttgt 322  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5618107 cgtaagaaaagttaggaatttaacacatttttcacctaattttttaaataccttcaaaaaattcaatgcacctttaaacattaagtaggcaaagttttgt 5618008  T
Q  323 gacatcatttacctcgagtaacataatacaatgaagtacctttcaaaaaacaaatacaatgaagtaaagttacaaaagaatttggttcaacgtaaaaaca 422  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5618007 gacatcatttac--cgagtaacataatacaatgaagtacctttcaaaaaacaaatacaatgaagtaaagttacaaaagaatttggttcaacgtaaaaaca 5617910  T
Q  423 tttagaataaattagttatt 442  Q
    ||||||||||||||||||||    
T  5617909 tttagaataaattagttatt 5617890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 5618352 - 5618195
Alignment:
Q  8 atttcaggatgattcaaatcacacaaatactcttgctccatataaacaaataagactcagcccgtccataatatttggttctcgctctcgtcggcattaa 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5618352 atttcaggatgattcaaatcacacaaatattcttgctccatataaacaaataagactcagcccgtccataatatttggttctcgctctcgtcggcattaa 5618253  T
Q  108 taaaaggtttccatttatgaatgtcaaaagtattttcttagggaatatgaatgtcaaa 165  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5618252 taaaaggtttccatttatgaatgtcaaaaatattttcttagggaatatgaatgtcaaa 5618195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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