View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4492_high_2 (Length: 305)
Name: NF4492_high_2
Description: NF4492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4492_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 7439447 - 7439165
Alignment:
| Q |
18 |
acctatggcaacattagactataatgtaatgctatatatgctatatgttccttatagtcttgtgcnnnnnnnnn-----taactttaccaagtgcagcat |
112 |
Q |
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| T |
7439447 |
acctatggcaacattagactataatgaaatgctatatatgctatatgttccttatagtcttgtgcaaaaaaaataaaaataactttaccaagtgcagcat |
7439348 |
T |
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| Q |
113 |
gacatttcttttccttgaagttgaatggaaactttatagttcaaaattaatagctgcatatgagttcttgaatgttgtcttggattgtagaattgctcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7439347 |
gacatttcttttccttgaagttgaatggaaactttatagttcaaaaataatagctgcatatgagttcttgaatgttgtcttggattgtagaattgctcag |
7439248 |
T |
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| Q |
213 |
ttgagtgaatccttgacaccagtaatccaggtgtggcgaaaaatatggctacgaaaaatgatcattacttttctcatcctatg |
295 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7439247 |
ttgagtggatccttgacaccagtaatccaggtgtggcgaaaaatatggctacgaaaaatgatcattacttttctcatcctatg |
7439165 |
T |
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